Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01392 ATGGCTAGCAGACACAGAAAACTCTTCCCTGATGAAAACACCACAAACCAAACTCAAGATTGTTATGGCTTTTGTGACCCAGCATGCCCTTACAATTGTTACTCTAATAACCCTGATTACTTTTTCTCTCCACCACCACCTTCTATTTCACACTCAACCCAAGTTAACCATGTATCCTCCTACTTGATCATTCTTGTTACTCTATTCATTGTCATTTTTGTTATGGTTGGTTTCTACGTGATCAAAGTGAAGTGCTATGCTGCATGGTGCGGGTGGAGATTCAACGGATCCGTTCCCTCTCAATCAGACACCACTGAGGAGTTTCTCAATGAGAACCAAGTTGACCACCCCGTGTGGCTCATCGCCACTGTGGGGTTGCAACAATCGATCATTAACTCCATCACGGTTTGCAAGTACAAGAAGAATGAAGGGTTGGTCGAAGGAACCGAGTGTTCGGTGTGTTTGAACGAGTTCCAAGAAGAAGAGACCTTGAGACTCTTGCCAAAGTGCAACCATGCTTTTCATATTCCTTGTATTGACACTTGGTTGAGATCACACACCAATTGTCCTCTTTGTCGTGCCGGTATTGTCTCTAATAGTGTCACTTCTGAAGCACAAATGTCCAATTTGGAGCAAGAAAATGCAAACTTGGGGAGGAATCAAGAGACCCTTTTGGAGAATTCACGAAACAATGAAGGTGGGTTAAGCAGCAACAACATGGTTGCAGGGGAATCAAGTGAAGCACTAGATGAATCAAATTCTAAGGTAAATGATCAAACTCAGAATCAGAACAATCAGGTTCTGAATATTGAGATTCAACCAGAGATGGGGTCTGTTTCAACTACAGAATCTGAAAGCCATCATGTTGTTGATGATCATAAACAACATGATGACACGGTTAATCTACAGAAGCAAGAGCAAGATGGTGATTACTACAACTCAAAAACGAGTAAAACAATGCGTCGTTCCTCTATTGAAGAGTGTTTGCATTTAAGCCCGGTTTCTATGAAAAGGTCATTCTCCTCATCCTGCAATGGAAGGATTCTAACTTCGAGAGGTTACATGAGTCTAAACTCTAAACTCAATTCATCACTACTACTAGAATTTTCAATCTCTTAG 1119 0.4147 MASRHRKLFPDENTTNQTQDCYGFCDPACPYNCYSNNPDYFFSPPPPSISHSTQVNHVSSYLIILVTLFIVIFVMVGFYVIKVKCYAAWCGWRFNGSVPSQSDTTEEFLNENQVDHPVWLIATVGLQQSIINSITVCKYKKNEGLVEGTECSVCLNEFQEEETLRLLPKCNHAFHIPCIDTWLRSHTNCPLCRAGIVSNSVTSEAQMSNLEQENANLGRNQETLLENSRNNEGGLSSNNMVAGESSEALDESNSKVNDQTQNQNNQVLNIEIQPEMGSVSTTESESHHVVDDHKQHDDTVNLQKQEQDGDYYNSKTSKTMRRSSIEECLHLSPVSMKRSFSSSCNGRILTSRGYMSLNSKLNSSLLLEFSIS 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01392 372 PANTHER RING-H2 FINGER PROTEIN ATL16 44 342 IPR044600 GO:0016567|GO:0016740
Pumo9g01392 372 ProSiteProfiles Zinc finger RING-type profile. 151 193 IPR001841 -
Pumo9g01392 372 SMART ring_2 151 192 IPR001841 -
Pumo9g01392 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 202 IPR013083 -
Pumo9g01392 372 Pfam Ring finger domain 150 193 IPR001841 -
Pumo9g01392 372 SUPERFAMILY RING/U-box 141 198 - -
Pumo9g01392 372 FunFam RING-H2 finger protein ATL54 126 199 - -
Pumo9g01392 372 Coils Coil 200 227 - -
Pumo9g01392 372 MobiDBLite consensus disorder prediction 227 264 - -
Pumo9g01392 372 CDD RING-H2_EL5-like 150 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01392 Pumo-Chr9 40939434 40940552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01392 4 203 C3H Transcription Factor Family AT1G72220 48.696 1.06e-64 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01392 - - gmx:100805705 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01392 9 40939434 40940552 Pumo9g01392 9 40939434 40940552 ECH