Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01368 ATGAATCAAAACCAGCTCCAGCCCCTGCCTCTCCTTAGCAGCTTCCTAGGTTCATCTCCTGAAGAAGAATCTTTGCTACAAAACCAAAATCCTAAGGCATGCCATGGTCATCAAGTTGAGGATGTCACAGTGGCCTTACACATAGGCCTCCCTGACCATTCAAGTGCCTCCACCAATAATAATCATGGATTTGTGAATGCCACAGCTCAAGTTCCTAACAATTACTGGATACCAACTCAAGAGCAGATCCTCATTGGGTTTAGCCATTTCTCTTGTCCTGTGTGCCTCAAAACCTTCAACCGCTACAACAACCTTCAGATGCATATGTGGGGACATGGGTCACAGTATCGAAGAGGCCCAGACTCGCTGAAACGAACCCATCCACGACCCTTGTTGGACATTCCCTGCTACTGTTGCTCAAGAGGGTGCAAGAACAACATCGAGCACCCACGAGCCAAGCCTCTCAAGGATTTTCGAACCCTTCAGACACACTACAAGAGGAAGCACGGTGCCAAGCCCTTCACGTGCCGCAAGTGTGCCAAGCCTCTCGCCGTCAAAGGTGACTGGCGAACCCACGAGAAAAACTGTGGCAAACGATGGCTTTGTATCTGTGGCTCTGACTTCAAACACAAGAGGTCCCTCAAAGACCACATCAAAGCCTTTGGGTTTGGTCACACCCCTTTTTCTTCTTCTTCTGATGGCATGTAA 708 0.4901 MNQNQLQPLPLLSSFLGSSPEEESLLQNQNPKACHGHQVEDVTVALHIGLPDHSSASTNNNHGFVNATAQVPNNYWIPTQEQILIGFSHFSCPVCLKTFNRYNNLQMHMWGHGSQYRRGPDSLKRTHPRPLLDIPCYCCSRGCKNNIEHPRAKPLKDFRTLQTHYKRKHGAKPFTCRKCAKPLAVKGDWRTHEKNCGKRWLCICGSDFKHKRSLKDHIKAFGFGHTPFSSSSDGM 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01368 235 FunFam zinc finger protein WIP2-like 89 112 - -
Pumo9g01368 235 Gene3D Classic Zinc Finger 89 112 - -
Pumo9g01368 235 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Pumo9g01368 235 FunFam Zinc finger protein WIP2 143 225 - -
Pumo9g01368 235 SUPERFAMILY beta-beta-alpha zinc fingers 85 112 IPR036236 -
Pumo9g01368 235 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Pumo9g01368 235 PANTHER ZINC FINGER PROTEIN WIP2 9 229 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01368 Pumo-Chr9 40554845 40556529 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01368 1 230 C2H2 Transcription Factor Family AT1G34790 58.233 6.08e-99 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo9g01368 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01368 - - gmx:547675 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01368 9 40554845 40556529 Pumo9g01368 9 40554845 40556529 ECH