Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01367 ATGGCTTACCCACATTACCGATCACAGTTCGGAGACACAACGTTCACTAAGGTCTTCGTTGGAGGCCTAGCTTGGGAGACTCCAACCGAAGAAATGCGCAAGTATTTTGAGCAGTTTGGCGACATTCTTGAAGCTGTCATTATCACTGATAAGAACACAGGAAAATCTAAAGGCTACGGATTCGTAACATTCCGTGATCCAGAATCAGCTAGAAGAGCATGTGCTGATCCAAACCCAGTTATAGATGGAAGAAGAGCAAATTGTAACATTGCTTCTCTAGGAAGACCTAGACCATCACCACCTAGAGGGAGAGGTACATTCCAAGGAGGAGGAGGAGGAGGACCGGGAGCGGCGGCGGCGTCATACGGTGGCGTGCCGGCCGCAGGACCGCCGGCACTGGTGCCGCCGCCACCGCCGCTAGTGTACCCGCCATATGGCTACCCTACCTACACCCCTGATTATGGGTACCACCAAGCCACATTGTATAACCCACAAATTCAGCAACCACAATACTACCAACAACTCTATGGACCATCATCTTCCACCATGGGTTCCCCTTATTACTATGGCTATTCTGTGCAAGCACCAAGAGGCACATTTTCAACACCCCAACCACATCGCTTACCAGCTGGACCCTCCTATCTATACTACCCTACACCCATGGAAGGCTCTTTCTCTGCATATCGTCCACCACCTCAATTGCAACAACTTCCAATAAGATTCACAGACTCAGCAGCGTACCTCCTCCGAGACAGCAGGTGGAGTAGTTATAACTTCAGAAAGTTCAAATACTCAAGGGAGGAACTGATAAATATATACCTGCTAAGTTTCAACTGTATAATCTTCAAATTAAATTTTATCACATTAATTCTTGATCTTTTTCCACATCATATCTTCATTTTTTTGGTCCACATGCCTGTAGCTTTTAGGCAATAA 936 0.4679 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRGTFQGGGGGGPGAAAASYGGVPAAGPPALVPPPPPLVYPPYGYPTYTPDYGYHQATLYNPQIQQPQYYQQLYGPSSSTMGSPYYYGYSVQAPRGTFSTPQPHRLPAGPSYLYYPTPMEGSFSAYRPPPQLQQLPIRFTDSAAYLLRDSRWSSYNFRKFKYSREELINIYLLSFNCIIFKLNFITLILDLFPHHIFIFLVHMPVAFRQ 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01367 311 PANTHER BOULE-RELATED 6 238 - -
Pumo9g01367 311 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Pumo9g01367 311 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Pumo9g01367 311 SUPERFAMILY RNA-binding domain, RBD 9 116 IPR035979 GO:0003676
Pumo9g01367 311 SMART rrm1_1 17 89 IPR000504 GO:0003723
Pumo9g01367 311 CDD RRM_RBM24_RBM38_like 16 91 - -
Pumo9g01367 311 FunFam RNA-binding protein 24-B isoform X1 3 112 - -
Pumo9g01367 311 Gene3D - 3 114 IPR012677 -
Pumo9g01367 311 MobiDBLite consensus disorder prediction 91 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01367 Pumo-Chr9 40530725 40536817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01367 12 92 C2H2 Transcription Factor Family AT2G19380 39.506 2.64e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01367 K25006 - gmx:100787086 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01367 9 40530725 40536817 Pumo9g01367 9 40530725 40536817 ECH
Pumo9g01367 9 40530725 40536817 Pumo10g01129 10 14524224 14529066 PCT