Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01334 ATGACGAACCGTAATGTGAATAACACGCTTGTGGAGTTGGCAATGTCTATTTCGAACTCAAGTGCTCTACCTAGAGCTGCGGTGCCTGGACTAATGGCCTTGCTTGGTGGGGTTTTGGGCCTACCCCAGAAGAATCTCTTAATGAAAACTTTGGAGGATGGAAGTGTTGTTAAAGGAGGGACCAAATTTAACAACAACACATGGATTGATTCAATGAGAGCCTCTTCTCCCACTCGAGTCAAATCCACACAAAACAACCAAGACCCAACAAGTACTCCTTGGACTCTTTACCACCCTTCGGCACTGAGCATGTTTGATCAGATTATATGTGAGTCCAGAGGGAAGCAGATTGTGACTTTTCTTGACTATGATGGAACTCTCTCCCCAATTGTTGCAGATCCAGATAAAGCATACATGAGTAAAAAGATGAGGGCCACATTAAAGGACATGGCAAGGCATTTCCCCACCGCCATCGTGAGTGGAAGGTGCCTAGACAAGGTGTATAACTTTGTGAGATTGGCAGAACTGTACTATGCTGGGAGCCATGGAATGGACATCAAGGGACCAACAAATAGGCGAAGTACTAAGAAAGAAAGTGAACAAGTGCTTTTCCAACCCGCTAGTGAATTCTTACCCATGATCAATGAGGTGTACAACATCTTGGTGGAAAAAACAAAGTCTGTCCCTGGGGCTAAGGTAGAAAATAACAAGTTTTGCTTGTCCGTGCACTTTCGCTGTGTTGACGAAAAGAGTTGGGCGTCATTGGCTGAACAAGTTAGCTTGGTACTCAACGAGTACCCAAAACTTAAGCTAACTCAAGGGAGAAAAGTGCTTGAGATTCGACCAACCATAAAATGGGACAAGGGCAAGGCTCTTGAATTCTTGCTAGAGTCACTAGGATATGGTAATTCTGATAATGTATTTCCAATCTATATTGGTGATGATCGAACTGACGAAGATGCCTTTAAGGTTTTACGGAGGAGGGGCCAAGGGATTGGGATTCTTGTTTCTAAAATTCCAAAAGAAACCGATGCTTCCTACACTTTGCAAGATCCAACAGAGGTTGGGCAGTTTTTGCGGCATTTGGTGGAGTGGAAAAGAACGAGTTCCCAATACCACAAGTTGTAG 1128 0.4406 MTNRNVNNTLVELAMSISNSSALPRAAVPGLMALLGGVLGLPQKNLLMKTLEDGSVVKGGTKFNNNTWIDSMRASSPTRVKSTQNNQDPTSTPWTLYHPSALSMFDQIICESRGKQIVTFLDYDGTLSPIVADPDKAYMSKKMRATLKDMARHFPTAIVSGRCLDKVYNFVRLAELYYAGSHGMDIKGPTNRRSTKKESEQVLFQPASEFLPMINEVYNILVEKTKSVPGAKVENNKFCLSVHFRCVDEKSWASLAEQVSLVLNEYPKLKLTQGRKVLEIRPTIKWDKGKALEFLLESLGYGNSDNVFPIYIGDDRTDEDAFKVLRRRGQGIGILVSKIPKETDASYTLQDPTEVGQFLRHLVEWKRTSSQYHKL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01334 375 NCBIfam HAD-IIB family hydrolase 120 328 IPR006379 -
Pumo9g01334 375 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 59 373 IPR044651 GO:0004805|GO:0005992
Pumo9g01334 375 FunFam Trehalose 6-phosphate phosphatase 213 372 - -
Pumo9g01334 375 Gene3D - 199 283 - -
Pumo9g01334 375 NCBIfam trehalose-phosphatase 115 363 IPR003337 GO:0003824|GO:0005992
Pumo9g01334 375 Gene3D - 120 349 IPR023214 -
Pumo9g01334 375 SUPERFAMILY HAD-like 120 366 IPR036412 -
Pumo9g01334 375 MobiDBLite consensus disorder prediction 74 93 - -
Pumo9g01334 375 FunFam Trehalose 6-phosphate phosphatase 207 283 - -
Pumo9g01334 375 Pfam Trehalose-phosphatase 120 352 IPR003337 GO:0003824|GO:0005992
Pumo9g01334 375 CDD HAD_TPP 120 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01334 Pumo-Chr9 38981835 38984719 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01334 120 362 Trehalose Biosynthesis Gene Families AT1G70290 28.185 1.24e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01334 K01087 - gmx:100792915 692.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01334 9 38981835 38984719 Pumo10g01154 10 14898983 14901954 PCT