Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01313 ATGGGTCGTGTTAAACTCGAGATAAAGAGAATAGAGAACCCCACGAATCGACAAGTCACATTCTCAAAGCGTAGAAATGGCCTCATCAAGAAAGCATACGAGCTATCAATCCTATGTGACATTGATATTGCCGTTATAATGTTTTCTCCATCAGGACGTGTCAACCACTTTTCCGGTAGGAGGAGGATTGAGGATGTTTTTACTCGTTACATTAATCTTCCTGACCAAGAAAGAGATAACGCTGTAAGTTTTCCTGAGCTACCCTACCGCAGGGGTATTCAGAATAAGGAGTATTTGCTTAGGACCCTTCAGCAACTGAGGAGTGAAAATGACATAGCCCTTCAACTGGCCAATCCGGGAGACATTAACTCCGAGATTGAGGAACTCCAACAAGAAGTTAATAGGTTACAACAGCAGCTTCAAATGGCCGAGGAGCAGATAAGGTTATATGAACCCGACCCATTAAAGATGTCATCTATGACGGATCTTGAAAACAGTGAAAAGCAACTAGTAGATGTTTTGACACGTGTCATACAGAGAAAGGAATACTTGTTGAGCAACCATCTATCTTCGTATGATCCATCTGGTATTCAGGGGATACCGACCTCTTTCGAGAATGTAGGTTGGTTGCAGGATGGGAGTCAGAACCATGCTCAGATTTTTGATGCATCTGCTCCTTTAGATCCTCTCAGGGACTTGTCTTCCACCGTGTATGGTTCATTTTCCCAAGGAACAAGTTCAAATGCTGATCCACGAGCCATGGGGGAGTGCCACGTGTCAAATCCAAGCGATGGGAACCTTCAAGCATGGCCTCAAGGGTACACATTGTATCCTCATCATATTCAGCATGACATGGTGGGACCCGACATGCCAGATATGATGCCACATGGACAAGTGAACATCCCAATCACTGCCTCACACGTGGAACCACCCAAGAATGAACCTGTAGAATATGACCAGTCCAAACAACCTCATCATCATCAACTTAATGCTCAATGA 999 0.4434 MGRVKLEIKRIENPTNRQVTFSKRRNGLIKKAYELSILCDIDIAVIMFSPSGRVNHFSGRRRIEDVFTRYINLPDQERDNAVSFPELPYRRGIQNKEYLLRTLQQLRSENDIALQLANPGDINSEIEELQQEVNRLQQQLQMAEEQIRLYEPDPLKMSSMTDLENSEKQLVDVLTRVIQRKEYLLSNHLSSYDPSGIQGIPTSFENVGWLQDGSQNHAQIFDASAPLDPLRDLSSTVYGSFSQGTSSNADPRAMGECHVSNPSDGNLQAWPQGYTLYPHHIQHDMVGPDMPDMMPHGQVNIPITASHVEPPKNEPVEYDQSKQPHHHQLNAQ 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01313 332 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo9g01313 332 FunFam MADS-box transcription factor 41 13 92 - -
Pumo9g01313 332 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pumo9g01313 332 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Pumo9g01313 332 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Pumo9g01313 332 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pumo9g01313 332 Coils Coil 119 153 - -
Pumo9g01313 332 MobiDBLite consensus disorder prediction 305 332 - -
Pumo9g01313 332 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo9g01313 332 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo9g01313 332 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo9g01313 332 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 216 - -
Pumo9g01313 332 Gene3D - 14 86 IPR036879 GO:0003677|GO:0046983
Pumo9g01313 332 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01313 Pumo-Chr9 38596173 38602095 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01313 1 305 Type I MADS-box Gene Family AT1G22130 58.599 4.41e-120 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pumo9g01313 SRF-TF 5.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01313 - - gmx:100305913 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01313 9 38596173 38602095 Pumo9g01313 9 38596173 38602095 ECH