Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01296 ATGTCGTTTGTGAAGCACAATATACCTTTTCCATGTGAGGTGGAAAGGGACAACTTGGGGCGAATCTACGGGTTGATCATTAATTTGGAATGGCATATGAACTCTTCATCAACTCAACTAGTCCTTGCGAAAAGGATGGGTATATATGATCCATTCTATCAAGTGAACATGTGGGGGGACAGCTTTAAAATTGATGGAAGCTTGAACTCAATTGCTCCCCCAATGTTAATGATTAAGCCTAGCATGCAGAACAAGAAGTCTTTTGAATTTTATTTGTCCAGTCTGAATGTACTTCCTCAAGAATCAAGGGAACCTTCTGGAGATGATCAAGAGACTAATGAAAAAACTAATACTAAGGCGCTAAGACGTCAAGCTCAAAATCGTGAGGCTGCTCGAAAATGCCGGCTGCGGAAGAAGGCTTATGTTCAACAATTAGAAACAAGCCGTGTGAAGCTCATGCAATTGGAGTTGGAGATCGAGAAAGCAAGAAAACAGGGTCTATACATACGCAGTGCACTAGATGTAAGTTATATGGGATCATCTGGTACAATAAACCCAGGGATAACTATGTTTGAACTTGAATATGGACAATGGATTGAAGAGCAAGATAGACAGAATCAAGAACTGAGAAATGCATTACAAACTCATGCATCTGATATGCAGCTTCATCTACTAGTTGAGAGTTGCATGAACCACTACTCAAATCTTTTCAGGATGAAAGCAGAAGCTGCAAAGGCTGATGTCTTTTATTTAATCTCTGGTGCATGGAAAGCATCAGTGGAACGCCTTTTTCTTTGGATTGGAGGATCCCGTCCATCACAGCTTCTAAATATCATTGCACCACAGCTTGAGCCTTTGACTGATCCACAAATTGTGAGCATTAACAACCTCCGGCTTTCATCTCAGCAAGCTGAAGATGCTCTTTCACTAGGATTGGACAAACTCCAGCAGAGTCTGGTCCACAACATACCATCAGATCCCTTGGTTGTAGGACACTACGGGTTTGAGATGGCTGTTGCCATGGACAAAGGTGAAGCACTAGAAGGTTTTGTAAACCAGGCAGATCACCTTAGGCAACAAACTCTGATTTACTTGTCTCGGATCCTGACGACTGGGCAAGCTGCTAAAGGCTTGCTGGCTATGGGAGAATACTTTCATCGTCTTCGCACTCTTAGTTCTTTATGGACTGCTCGTTCATGTGAACCTTCCTTTCCCACTCAACTCTCAAACTGA 1233 0.425 MSFVKHNIPFPCEVERDNLGRIYGLIINLEWHMNSSSTQLVLAKRMGIYDPFYQVNMWGDSFKIDGSLNSIAPPMLMIKPSMQNKKSFEFYLSSLNVLPQESREPSGDDQETNEKTNTKALRRQAQNREAARKCRLRKKAYVQQLETSRVKLMQLELEIEKARKQGLYIRSALDVSYMGSSGTINPGITMFELEYGQWIEEQDRQNQELRNALQTHASDMQLHLLVESCMNHYSNLFRMKAEAAKADVFYLISGAWKASVERLFLWIGGSRPSQLLNIIAPQLEPLTDPQIVSINNLRLSSQQAEDALSLGLDKLQQSLVHNIPSDPLVVGHYGFEMAVAMDKGEALEGFVNQADHLRQQTLIYLSRILTTGQAAKGLLAMGEYFHRLRTLSSLWTARSCEPSFPTQLSN 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01296 410 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 117 152 IPR004827 GO:0003700|GO:0006355
Pumo9g01296 410 Pfam bZIP transcription factor 118 153 IPR004827 GO:0003700|GO:0006355
Pumo9g01296 410 FunFam BZIP family transcription factor 118 167 - -
Pumo9g01296 410 ProSiteProfiles DOG1 domain profile. 188 398 IPR025422 GO:0006351|GO:0043565
Pumo9g01296 410 SUPERFAMILY Leucine zipper domain 120 152 IPR046347 GO:0003700|GO:0006355
Pumo9g01296 410 PANTHER TRANSCRIPTION FACTOR TGA9 34 400 - -
Pumo9g01296 410 Gene3D - 118 170 - -
Pumo9g01296 410 Coils Coil 199 219 - -
Pumo9g01296 410 Pfam Seed dormancy control 206 280 IPR025422 GO:0006351|GO:0043565
Pumo9g01296 410 MobiDBLite consensus disorder prediction 104 121 - -
Pumo9g01296 410 Coils Coil 138 165 - -
Pumo9g01296 410 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 122 137 IPR004827 GO:0003700|GO:0006355
Pumo9g01296 410 MobiDBLite consensus disorder prediction 100 121 - -
Pumo9g01296 410 SMART brlzneu 118 175 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01296 Pumo-Chr9 38307713 38313513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01296 34 403 Calmodulin-binding Proteins AT1G77920 55.438 6.61e-139 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pumo9g01296 DOG1 6.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01296 K14431 - gmx:100775882 667.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01296 9 38307713 38313513 Pumo10g01183 10 15494552 15499490 PCT