Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01292 ATGCCTCCGCCGCAGCCTCGCCGCGTGGACCCCAAAATCTGGCGGGCATGCGCCGGCGCCGCCGTGCAAATCCCCAAACTGCACTCTAGGGTTTACTACTTCCCCCAGGGCCACATGGAACACGCCTCTCCCTCGCAGCATTATCCTCCTCACTCCCTCAACCCTCTCCTCCGCTCTCTCCCCTTCGTCCCCTGCCACGTGTCCTCCCTCGATTTGCTCGCCGATCCTTTCTCCGACGAGATCTTCGCCAAGTTTCTCCTCACTCCCCTCTCACAACCTTTCCAAAACGACCGAAACGACGACGACGACGACGAGAAGGACCGCGAGAACGGCGTCGTTTCGTTCTCGAAGATTCTCACCCCTTCCGACGCGAACAACGGCGGCGGCTTCTCCGTGCCGCGCTTCTGCGCCGACTCCTGCTTCCCTCCCCTCGATTTCCGCGCCGATCCCCCCGTCCAGCTCCTCTCCGTCGCCGACGTCCACGGCGTCGCGTGGCGCTTCCGCCACATCTACCGCGGCACGCCGCGCCGCCACCTCTTCACCACCGGCTGGAGCAAGTTCGTCAACCACAAGAAGCTCGTCGCTGGCGACACCGTCGTCTTCGTCAAGGACTCCGACGGCAACGTCTACGTCGGGATCCGCCGCGCCGCGCGGTTCACCGCCACAACCTCGCTCGCCGAGACTCCGCCGGAACGGGAGGGGTTTTCGCGGCACTCTACGGGGAGAGTGATGGCGAAGGAGGTGGCGGCCGCCGCGGAGTCCGCGGCCCGAAACGCACCGTTTGAGGTGGTGTATTATCCGAGGACCGGTTTTGCGGATTTTGTTGTGAGTGCTGAGGTTGTGGAGGAATCGATGAAGTGCGTGTGGGTCGGTGGAATGAGAGTGAAGATGGCAATGGAGACTGAGGATTCTTCTAGAATGACGTGGTTTCAGGGAACGGTGTCTTCTGCATGTTCTTCTGATAATGGCCCTTGGCGCATGCTTCAGGTTAACTGGGATGAACCTGAAGTCTTGCAGAATGCAAAGCAAGTCAATCCTTGGCAGGTTGAACTTGTTTCTCCCCCATTTGCACTTCATAAAGTATTTACCCCTACAAAAAGGCTTAGAGCTGACCACGGTTCTGGGCTGTTTAGTGATAGGGAGGGAGACCCCTTCTTTCCCATGACAGGGTTCCCTAACTCAACAATGGGACACATGACAGGGTTCCCTAACTCAACAATGGGACACATGAATAAATCATTTTTGAGTTATGATACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTGCATCGAGTTTTTCCAACTTTTTAAATGATAACTCTTATCTGTATATGGGTAATGGTTCCTTTGGGAACAATCCAGTGCAAAGTTTGGGAACTGTGACAACAGAGCTAAACATTAGCAGTTCTCAATCGGATGACTTGTCACCACATAGCCAGAGTAGTTTTCATTCCTTTGGCACAGAGTTTACTGGGACCCGGAACTGTGACACCAAAGTTGGTTCCGGTTCAATTCTGCTATTTGGTAAGATCATAAAGCCTGCTGAAAGTGACTTTGCATGA 1575 0.5511 MPPPQPRRVDPKIWRACAGAAVQIPKLHSRVYYFPQGHMEHASPSQHYPPHSLNPLLRSLPFVPCHVSSLDLLADPFSDEIFAKFLLTPLSQPFQNDRNDDDDDEKDRENGVVSFSKILTPSDANNGGGFSVPRFCADSCFPPLDFRADPPVQLLSVADVHGVAWRFRHIYRGTPRRHLFTTGWSKFVNHKKLVAGDTVVFVKDSDGNVYVGIRRAARFTATTSLAETPPEREGFSRHSTGRVMAKEVAAAAESAARNAPFEVVYYPRTGFADFVVSAEVVEESMKCVWVGGMRVKMAMETEDSSRMTWFQGTVSSACSSDNGPWRMLQVNWDEPEVLQNAKQVNPWQVELVSPPFALHKVFTPTKRLRADHGSGLFSDREGDPFFPMTGFPNSTMGHMTGFPNSTMGHMNKSFLSYDTFPAGMQGARHDLFSASSFSNFLNDNSYLYMGNGSFGNNPVQSLGTVTTELNISSSQSDDLSPHSQSSFHSFGTEFTGTRNCDTKVGSGSILLFGKIIKPAESDFA 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01292 524 Pfam Auxin response factor 251 326 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pumo9g01292 524 ProSiteProfiles B3 DNA-binding domain profile. 115 217 IPR003340 GO:0003677
Pumo9g01292 524 SUPERFAMILY DNA-binding pseudobarrel domain 109 221 IPR015300 -
Pumo9g01292 524 Gene3D - 290 354 - -
Pumo9g01292 524 Gene3D - 112 217 IPR015300 -
Pumo9g01292 524 FunFam Auxin response factor 113 217 - -
Pumo9g01292 524 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 482 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pumo9g01292 524 CDD B3_DNA 114 215 IPR003340 GO:0003677
Pumo9g01292 524 Pfam B3 DNA binding domain 115 216 IPR003340 GO:0003677
Pumo9g01292 524 SMART B3_2 115 217 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01292 Pumo-Chr9 38252397 38256867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01292 7 520 B3 DNA Binding Superfamily AT1G77850 47.978 8.93e-161 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pumo9g01292 B3 5.5e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01292 - - gmx:100804933 912.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01292 9 38252397 38256867 Pumo9g01292 9 38252397 38256867 ECH
Pumo9g01292 9 38252397 38256867 Pumo10g01192 10 15555752 15556105 PCT