Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01267 ATGGAGAGAGCGTTGCAGTGGATTCTGGTTTTAGCAGTATGTGCTTCATCAATCATTATTGGTGCTGAGGAAATCGATGAACCTGCTGATAGGAAGCTTGCCGATGTTGATTATCCAGATGTGATAAGCATTGATTGTGGGGTAAAGGAGGGCTACACTGACACGACCCGCATACAGTATGAAGATGATGATATCCAATTTGGTCAAATTCATACTATATCCTCGAATAACAGCTTAAATTATCAACCACAAATTCAGAAGCAGCTGATCTCATTGAGAAGCTTTCCAGAAGGGAAGAGAAATTGCTATACCTTGAAACCCAATCAGGGAAAGAACAACAGATACATTGTGAGGAGTTACTATGCATATGGAAACTATGACAACAAAGATAAACCCCCAGTTTTTGATTTGTACATTGATGTCACTAACTTCACGTTCATACGATTCACTGTGGCCGAATCCACTCGTAGGGTTGAGGCTATTTATTTCAGCTTAACAGACACAATTGATTTCTGCCTCGTGAACATCGACCAAGGGGTTCCTTTCATTTCGTTGTTGGAATTATGGCCTTTGGACAGTGCTACTATTTATCAAGCTTCGTTAAATTTTCAGACGCTAGATCTCCTCACTAGGGTTACACTTGGCGTATCTACAGACTCTACAAAGGACGAATACTTGCTGAGGTATGTTGGTGACAAATATGGTAGGTCTTGGCTTGTAAGAGCAGTAACACGTAACGAGAAACAAATGATTACATCATTAGCTATTGATTTGGATAAACTGAATGATCCTTACAATCTGCCGACAGAAGTTTTGAACACTGCAGTCAGCGCGTTGAGGTTGTCCGATTCGGTGAATATCTGGAGGATTTTTAATGACACGAATTTTGAATACAAAGTGTACCTTCATTTTTTCGACTTTGAGGACAGGATAGATAATAATAAGAAAAGGATAATGAATATTATTGTTAATGGCAACAATGTTGATGAGAATGTCACAGAAAACATCACCCTTTCGTACTGGGAGCCCCTTACCGTAGCACTTTCTATAAAACAAGGGATGGGCATTAATAATATTTTTATTAAAGCCACCCCTGAATCTGACTTACCCGCCATGCTTAATGCCTATGAGATTTACAGAGTGGTTCCTCAGTCTGTTTCAGCCACTCAACAAGAGGATGTTGACGCTATCCAACACATCAAAGATATCTATAAGATCTCCAGAATCACGTGGCAAGGAGACCCCTGCGAACCAACGGATTTTACATGGGACGGTCTAACTTGTAGTACCGGAAACACTCCAAGAATCATTTCACTAAACTTGAGTTCAAGTAAATTGTCAGGCGAGATAGATGCCTCGTTCTCCAACCTCGCAAATTTAGAGATTTTGGATTTGTCAAACAACGAATTGGTGGGAAAGGTGCCAGAATATTTGGCAAATTTACCACATCTGAAGATCCTTAATTTGTCTAGGAATAGTCTCACAGGTTCCATTCCAGATGCTCTCATAGCGAAGTCAAATTTGCAGTTGAGTCTGGATGGAAATGCTGGTCTCTGTCAGATAGGGTCATGCGAAGAGAAGACGTCTATTGTTCCATTAGTTGCGTCTATAGCAGCATCAATTGTCGTCCTCATAATAATAGTGGGCGTAGTTATGGCTTGGAGATCACACAGAAAAAATGGACCAGGGATATCTCGAACTTCAAATAAAGAGAAGCTAAAATTGAAAAATCAAGCATTTTCTTACTCAGATGTTCATAGAATCACTGATGGTTTCAAAACAATGATTGGAAAAGGTGGATTTGGTGAGGTTTACCTTGGTACTCTGCAGAGTGGCGAAAGGGTTGCCGTAAAGACACTTTCTTTATCATCAAATCAAGGCTATAAGGAGTTTAAGTCAGAGGCAAAATTCTTGACACTTGTTCATCATAGAAATGTGGTTTGTCTTGTGGGGTACTGTGACGAAGGTGACACTAAAGCACTTATTTACGAATATCTCCCAAAGGGGAACCTCCAAGAACAATTGTCAGATAAAAGCCCAACTGTCTTGGGATGGAATGACAGACTTCAAATTGCCTTAGATGCAGCAAATGGTGGCACACCGGGTTACCTTGATCCTGAGTAA 2124 0.404 MERALQWILVLAVCASSIIIGAEEIDEPADRKLADVDYPDVISIDCGVKEGYTDTTRIQYEDDDIQFGQIHTISSNNSLNYQPQIQKQLISLRSFPEGKRNCYTLKPNQGKNNRYIVRSYYAYGNYDNKDKPPVFDLYIDVTNFTFIRFTVAESTRRVEAIYFSLTDTIDFCLVNIDQGVPFISLLELWPLDSATIYQASLNFQTLDLLTRVTLGVSTDSTKDEYLLRYVGDKYGRSWLVRAVTRNEKQMITSLAIDLDKLNDPYNLPTEVLNTAVSALRLSDSVNIWRIFNDTNFEYKVYLHFFDFEDRIDNNKKRIMNIIVNGNNVDENVTENITLSYWEPLTVALSIKQGMGINNIFIKATPESDLPAMLNAYEIYRVVPQSVSATQQEDVDAIQHIKDIYKISRITWQGDPCEPTDFTWDGLTCSTGNTPRIISLNLSSSKLSGEIDASFSNLANLEILDLSNNELVGKVPEYLANLPHLKILNLSRNSLTGSIPDALIAKSNLQLSLDGNAGLCQIGSCEEKTSIVPLVASIAASIVVLIIIVGVVMAWRSHRKNGPGISRTSNKEKLKLKNQAFSYSDVHRITDGFKTMIGKGGFGEVYLGTLQSGERVAVKTLSLSSNQGYKEFKSEAKFLTLVHHRNVVCLVGYCDEGDTKALIYEYLPKGNLQEQLSDKSPTVLGWNDRLQIALDAANGGTPGYLDPE 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01267 707 PRINTS Leucine-rich repeat signature 460 473 - -
Pumo9g01267 707 PRINTS Leucine-rich repeat signature 481 494 - -
Pumo9g01267 707 SUPERFAMILY Protein kinase-like (PK-like) 578 698 IPR011009 -
Pumo9g01267 707 SMART tyrkin_6 590 707 IPR020635 GO:0004713|GO:0006468
Pumo9g01267 707 Pfam Protein tyrosine and serine/threonine kinase 593 698 IPR001245 GO:0004672|GO:0006468
Pumo9g01267 707 Pfam Leucine rich repeat 438 494 IPR001611 GO:0005515
Pumo9g01267 707 FunFam Leucine-rich repeat receptor-like kinase 392 521 - -
Pumo9g01267 707 ProSiteProfiles Protein kinase domain profile. 590 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g01267 707 PANTHER OS07G0107800 PROTEIN-RELATED 42 698 - -
Pumo9g01267 707 Pfam Malectin-like domain 44 381 IPR024788 -
Pumo9g01267 707 Gene3D Ribonuclease Inhibitor 396 521 IPR032675 -
Pumo9g01267 707 Gene3D Transferase(Phosphotransferase) domain 1 570 699 - -
Pumo9g01267 707 SUPERFAMILY L domain-like 419 509 - -
Pumo9g01267 707 ProSitePatterns Protein kinases ATP-binding region signature. 596 618 IPR017441 GO:0005524
Pumo9g01267 707 Gene3D - 208 364 - -
Pumo9g01267 707 FunFam Leucine-rich repeat receptor-like protein kinase 567 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01267 Pumo-Chr9 37441903 37452792 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01267 37 698 Receptor kinase-like Gene Family AT2G19210 38.978 6.18e-135 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Pumo9g01267 Malectin_like 1.3e-68 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01267 - - pvu:PHAVU_008G164600g 860.907