Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01263 ATGGTTAAGCCAGAGAACAAGATCCACACAGATTCATCATCATCAAAGCCAATGAAACCATTATCTTCATCACCATCATCAAGTGACAACAAGAAGAAGTACAAGGGAGTGAGAATGAGAAGCTGGGGGTCATGGGTGTCAGAGATTAGAGCACCAAACCAAAAAACTAGAATATGGTTGGGATCCTATTCAACTGCTGAAGCAGCAGCCAGAGCCTATGATGCTGCACTTCTATGCCTCAAAGGCTCCTCAGCCAATCTCAACTTCCCTTCAAGTTCCTCCTCACACTACATCCCTCAAGACACTGCCATGTCCCCAAAATCAATCCAAAGAGTGGCTGCAGCTGCTGCCAACAATTTCTTGGACAATAATGCTATTGCTATTAATAATGCTACCACCCCACCTTCCCCACCTTCTCCTCCTCTTGCTTCAACCCCTTCTTCTTCTTCTTCATTGACATCATCCCCATCAATGTCATCATCTCCATCAGAACAAATTGATGATGATGTCTCACTTCTATCACCATTTGGGGCCTACACTACTAGCTGTGATCAAGCAAATGAATCAATGGCCATGATGGAATCTTGGTATGGCTTGGAGGGCTTGCAATCCCCAAAGTATGTTGATCAAATGCTAAGTGGGGCATTCTTTGACATTGATTCAACACAGTTGCTTGATGATCTGTATGAAGAAAGTGACATTCGCTTGTGGAGTTTCTGCTGA 723 0.4398 MVKPENKIHTDSSSSKPMKPLSSSPSSSDNKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANLNFPSSSSSHYIPQDTAMSPKSIQRVAAAAANNFLDNNAIAINNATTPPSPPSPPLASTPSSSSSLTSSPSMSSSPSEQIDDDVSLLSPFGAYTTSCDQANESMAMMESWYGLEGLQSPKYVDQMLSGAFFDIDSTQLLDDLYEESDIRLWSFC 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01263 240 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Pumo9g01263 240 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Pumo9g01263 240 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Pumo9g01263 240 FunFam ethylene-responsive transcription factor ERF014-like 32 92 - -
Pumo9g01263 240 CDD AP2 32 92 IPR001471 GO:0003700|GO:0006355
Pumo9g01263 240 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Pumo9g01263 240 MobiDBLite consensus disorder prediction 145 167 - -
Pumo9g01263 240 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 182 - -
Pumo9g01263 240 Gene3D AP2/ERF domain 32 91 IPR036955 GO:0003700|GO:0006355
Pumo9g01263 240 Pfam AP2 domain 33 82 IPR001471 GO:0003700|GO:0006355
Pumo9g01263 240 MobiDBLite consensus disorder prediction 13 30 - -
Pumo9g01263 240 MobiDBLite consensus disorder prediction 128 167 - -
Pumo9g01263 240 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677
Pumo9g01263 240 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01263 Pumo-Chr9 37402433 37403690 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01263 1 239 AP2-EREBP Transcription Factor Family AT1G21910 46.768 1.74e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo9g01263 AP2 5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01263 - - gmx:100813313 312.768