Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01260 ATGCCAGTGAACCGTGGCCAAGGCCAAACCACAAGGTGGTACCAGATATGCTTTATTCCCACTAGTTCAGACAGTTCAGATGATTCAGACATAGAATCTGTAGTCCTAACTCCTAGTACTCCAACTCCAACTAGTAGTGCATGGCAAGAACTTTCTCCACCGTCATCGCCATCGCTACCGCCACTGCTGCTACCGCCACCACCACCACCACCAGACCTAGATTCTTTACCTCTTCAGCCTCTTCTTTTTCTTCATAGAGCTGTAGTCCTAACTCCTAGTACTCCAACTCCAACAACCAGTACTACATGGCAAGAACTTTCTCCATCGTCACGACCATTGTCACCGCCACCACCACTAAACCCAGAACCTGAAATTGATATGAGTTTTCCACTACCACCACCACCACCACTGTTGCCAGAGTTTCTACAGCCTCGGCCTCTTCAGAGAGCTTCGGCTAGAACATTTAACAATGAAGTACAACAAGATAGACACCAACCTCCAACAAGTCCAAGTCATGTGTTTGAAGGTGATCTAAGTGACTGCTCAATGAAGGCCATGAATGGCATTAGCAGGGTGAGAGTCTCAGAGACAGATAAACTCTCTCAGTGCCCCATTTGCATGGATGAATTTAAAGTGGGTGGTGAACAAGCATGCCAGTTACCCTGCAACCACACCTACTGTTTTGAGTGCATTCTTCGTTGGCTTAACAACAGCAAAACATGTCCAGTTTGCAGGCTTCAGTTGAATGGTTGTAGTTTTGATAGCATAATTGGTAATAATGGTTTGGATTCACAACCTGAAATTCCGCCACCACCACCACCACAACCTGAAATTCTGCCACCGCTTCCACCACCACCATTGCCACCACCACCACCACTACCACCAGTATTTTATAATGATTTGTCATGGGACTACTTTTTCCCAGTCATTCCTGATGTACCAGGTATAGAGAATAATGCAGGTGGTAACTCAGATGAAGCTGATTATGATAGTGCATGTGATGAGCTTTGTGATCCTCATGAAGATGGTGCTTCTCAGAGTGCTCCTGCTGCACTAACTTAA 1062 0.4595 MPVNRGQGQTTRWYQICFIPTSSDSSDDSDIESVVLTPSTPTPTSSAWQELSPPSSPSLPPLLLPPPPPPPDLDSLPLQPLLFLHRAVVLTPSTPTPTTSTTWQELSPSSRPLSPPPPLNPEPEIDMSFPLPPPPPLLPEFLQPRPLQRASARTFNNEVQQDRHQPPTSPSHVFEGDLSDCSMKAMNGISRVRVSETDKLSQCPICMDEFKVGGEQACQLPCNHTYCFECILRWLNNSKTCPVCRLQLNGCSFDSIIGNNGLDSQPEIPPPPPPQPEILPPLPPPPLPPPPPLPPVFYNDLSWDYFFPVIPDVPGIENNAGGNSDEADYDSACDELCDPHEDGASQSAPAALT 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01260 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 250 IPR013083 -
Pumo9g01260 353 ProSiteProfiles Zinc finger RING-type profile. 203 245 IPR001841 -
Pumo9g01260 353 SUPERFAMILY RING/U-box 202 248 - -
Pumo9g01260 353 MobiDBLite consensus disorder prediction 54 76 - -
Pumo9g01260 353 MobiDBLite consensus disorder prediction 22 76 - -
Pumo9g01260 353 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 145 248 - -
Pumo9g01260 353 MobiDBLite consensus disorder prediction 22 53 - -
Pumo9g01260 353 SMART ring_2 203 244 IPR001841 -
Pumo9g01260 353 MobiDBLite consensus disorder prediction 262 287 - -
Pumo9g01260 353 ProSitePatterns Zinc finger RING-type signature. 222 231 IPR017907 -
Pumo9g01260 353 MobiDBLite consensus disorder prediction 92 109 - -
Pumo9g01260 353 MobiDBLite consensus disorder prediction 265 287 - -
Pumo9g01260 353 Pfam Ring finger domain 202 245 IPR001841 -
Pumo9g01260 353 MobiDBLite consensus disorder prediction 92 123 - -
Pumo9g01260 353 MobiDBLite consensus disorder prediction 316 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01260 Pumo-Chr9 37379777 37381292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01260 182 249 C3H Transcription Factor Family AT1G68180 38.571 1.89e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01260 - K11982 gmx:102665811 352.443