Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01257 ATGACGAGCTTAGTCAGCTCATCAGCCATGGACATGATGGTGATGGACGACCCTGATTTCCTCGACTTCTCCGATCACAGTATCACAACCACCCCTTCCGAAGAATCACACTGGAACAACCTCTGGTCCCCTCTCCTCGACTGGGAATCCTTCGCCGCAGGCGAAAACGATTTCCAAACCCTCATTGACTCCGTCATGAACGACGACGACGTCGTTTTGACTCCACAATCAGATCAAGCCTCCGCCGCCGAAGAAGAATCAGACTCCACCGGCCACGACGAGAGGGGCCTCCGCCTGGTGCACCTCCTCATGGCGGCGGCGGAGGCCCTCACCACCGGCACCGAGAGCCACGACCTGGCTCGAGCGATATTGGTTCGGCTCAACGAGTTGGTGTCCCCCACCCACGGCACCAACATCGAACGACTCGCGGCGCATTTTAGCGTCGCCCTCCACCACCTGCTAGACGGCGCCGCGGGTGCGCACACCACCGACACCACCCTCACGGACACGCTCACCGCGTTCCAACTCCTCCAAGACATGTCCCCTTACGTCAAGTTCGCACACTTCACATCCAACCAGGCCATCCTAGAAGCCGTGGCCCACGAAAAACGAGTCCACATCGTGGATTTCGACGTCACCGAAGGGGCCCAATGGGCCTCACTAATTCAGGCCCTCTCGTCAGCAGGCCCACACCTCCGCATCACGGCATTGTCCAGAGGCTCCCCCTCTGGACGGAGATCCATGGCGACCGTTCAGGAAACCGGACGGAGGCTAACGGCGTTCGCTGCCTCCGTCGGACAACCCTTCTCCTTTCACCACTGTCGGTTGGACCCTGACGAAACGTTTCGTCCTTCTTCTTTAAAACTGGTTCGGGGAGAGGCTTTGGTGTTTAACTGCATGCTGCATTTGCCGCACCTCGGCTTCCGAGCCTCAGGTTCGGTTGCCTCGTTTTTAAAAGGCGCTAAGGAGTTGAACCCGAAGCTGGTGGTGCTTGTGGAGGAAGAAGTGGGGCGTGTTGCGGATTCGGGCTTCGTGGGCCTGTTTATGGACTCGCTGCACCACTACTCGGCGGTGTTTGATTCGCTCGAGGTTGGGTTTCCCATGCAGAGATGGGGCCGGGCTTTGGTGGAGCGCGTGTTTTTGGGCCCGAGAATAACGGGCTCGGTGGCCCGGATGTATAAGAGCGGTGAGAAGGAGAAAGAGAAAGAGACGTGGGTGGAGTGGTTGGGTGCGGCGGGGTTCAGGGGAGTTCCCATAAGCTTCGCTAATCACTGCCAAGCGAACTTGTTACTGGGTTTGTTTAACGATGGGTATAGGGTGGAGGAATTGGAGAATAATAGGTTGGTGTTGGGTTGGAAATCGCGGCGTTTGCTTTCAGCCTCTGTTTGGAGTTCGAACTCTTGA 1404 0.5755 MTSLVSSSAMDMMVMDDPDFLDFSDHSITTTPSEESHWNNLWSPLLDWESFAAGENDFQTLIDSVMNDDDVVLTPQSDQASAAEEESDSTGHDERGLRLVHLLMAAAEALTTGTESHDLARAILVRLNELVSPTHGTNIERLAAHFSVALHHLLDGAAGAHTTDTTLTDTLTAFQLLQDMSPYVKFAHFTSNQAILEAVAHEKRVHIVDFDVTEGAQWASLIQALSSAGPHLRITALSRGSPSGRRSMATVQETGRRLTAFAASVGQPFSFHHCRLDPDETFRPSSLKLVRGEALVFNCMLHLPHLGFRASGSVASFLKGAKELNPKLVVLVEEEVGRVADSGFVGLFMDSLHHYSAVFDSLEVGFPMQRWGRALVERVFLGPRITGSVARMYKSGEKEKEKETWVEWLGAAGFRGVPISFANHCQANLLLGLFNDGYRVEELENNRLVLGWKSRRLLSASVWSSNS 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01257 467 ProSiteProfiles GRAS family profile. 90 464 IPR005202 -
Pumo9g01257 467 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 83 460 IPR005202 -
Pumo9g01257 467 Pfam GRAS domain family 99 463 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01257 Pumo-Chr9 37328949 37330557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01257 84 467 GRAS Transcription Factor Family AT3G54220 35.013 3.15e-54 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pumo9g01257 GRAS 1.2e-98 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01257 - - gmx:100816317 709.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01257 9 37328949 37330557 Pumo9g01257 9 37328949 37330557 ECH