Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01220 ATGGCTCACAATCACATCGCCACCGATTCACTTCTCTCTCGTCGCATAGTTCGTGCCTTCCTCCACTTCCTCAACTCCGTTGAACCGGGTCCTGGGGTTGATGCTGAGGGGATTGAGGTTGCTAGGGAGTGTTTGGCAGACGCTTTTAAGCTTAATTCATCTCCTGTGGCTGGTGATGATGTGAAATCTGATTCATTGATTGAGATATTCAAGTCTCTTGAAGCTAACAAGCAATGTGAAACTAGTAAGTCAGACGTTGGTCCTTGGCCGGATTCTGCGGATGCTTCCAGTTCATTCTCGGGTGAGGATCCTGCTCGTGGGAAGAATCATTCTGAGGTGTCGAAATCCACGGATGAAGATTCAACACAGGGCCTTCATACTTTTGTATCTAAAGATGAACTGTGCGTACAATTCTTTGCTGCTCTGGAGATAAATCACTATTTTCAGAGCAATACTGATGGGAGTGATGACCCAGTGCAACTGGAGAAAGCAAGTTGTTTATTCAATGAGGCTTGTATGGAGATGGAAAGATCTGGTTGTCACCAGTTTAGTTTGAAGAATTTGGCTGAATCACTAAAAACACTAGGTAACAAGGCAATGCAATCTAAGAAATACTCTGATGCAATTGAGTTGTATAATTGTGCCATTGCAGTCCATGAAAAGAGTGCTGTATACTACTGCAACAGGGCAGCTGCTTACACTCAGATTAACAAATATAAAGAAGCGATCGAAGATTGTCTTAGATCTATCAAGATTGATCCAAACTACAGCAAGGCATACAGTCGTCTGGGTTTGATTTATTATGCACAAGGAGATTACAGAGATGCTATTGATTTCGGGTTTAGAAAAGCCTTGCAGTTGGATCCAAATAATGAGTCTGTCAAAGAAAATATACGGGTGGCTGAGCGTAAATTGTTAGAACAGCAACACCGTGCATATCACAGCCAGAATTCAAGATCATCTCAAGAATTCCAAAACCAATCCACGCGAGGATCAAGAAGCCATGGTGCGCCACCTCCATTTTCCTCTATGCCGTTTAACCCCAGCGATATTGCGAGCATGTTCATGAACATAGCGAACGCTACAAACGCACACCAGGGGTCAGGGTCACATTCTCAGGAAAGGCAAGAAGATAGCAATAGTAGTGGAGCTGGTGAACCTGAAATAAGAATTGGGGGCAATGTTAGTGTAAACATGGAGCAAATGCCAGAGGATCTATCAGGTGCCTTTCAATCTATGATGGAAATGTTATCTGGGGCTGTACCCCCTGGCCAACCACAAGACCAAACAAATGGAAGAACAGCACCAAACTAA 1314 0.4376 MAHNHIATDSLLSRRIVRAFLHFLNSVEPGPGVDAEGIEVARECLADAFKLNSSPVAGDDVKSDSLIEIFKSLEANKQCETSKSDVGPWPDSADASSSFSGEDPARGKNHSEVSKSTDEDSTQGLHTFVSKDELCVQFFAALEINHYFQSNTDGSDDPVQLEKASCLFNEACMEMERSGCHQFSLKNLAESLKTLGNKAMQSKKYSDAIELYNCAIAVHEKSAVYYCNRAAAYTQINKYKEAIEDCLRSIKIDPNYSKAYSRLGLIYYAQGDYRDAIDFGFRKALQLDPNNESVKENIRVAERKLLEQQHRAYHSQNSRSSQEFQNQSTRGSRSHGAPPPFSSMPFNPSDIASMFMNIANATNAHQGSGSHSQERQEDSNSSGAGEPEIRIGGNVSVNMEQMPEDLSGAFQSMMEMLSGAVPPGQPQDQTNGRTAPN 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01220 437 MobiDBLite consensus disorder prediction 81 122 - -
Pumo9g01220 437 MobiDBLite consensus disorder prediction 423 437 - -
Pumo9g01220 437 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 184 335 - -
Pumo9g01220 437 MobiDBLite consensus disorder prediction 105 119 - -
Pumo9g01220 437 ProSiteProfiles TPR repeat profile. 257 291 IPR019734 GO:0005515
Pumo9g01220 437 Coils Coil 291 311 - -
Pumo9g01220 437 Gene3D Tetratricopeptide repeat domain 184 344 IPR011990 GO:0005515
Pumo9g01220 437 MobiDBLite consensus disorder prediction 81 104 - -
Pumo9g01220 437 MobiDBLite consensus disorder prediction 416 437 - -
Pumo9g01220 437 Pfam Tetratricopeptide repeat 223 256 IPR001440 GO:0005515
Pumo9g01220 437 Pfam Tetratricopeptide repeat 258 291 IPR001440 GO:0005515
Pumo9g01220 437 Gene3D Immunoglobulin FC, subunit C 2 76 - -
Pumo9g01220 437 MobiDBLite consensus disorder prediction 363 383 - -
Pumo9g01220 437 FunFam Small glutamine-rich tetratricopeptide repeat-containing protein alpha 2 76 - -
Pumo9g01220 437 MobiDBLite consensus disorder prediction 311 336 - -
Pumo9g01220 437 MobiDBLite consensus disorder prediction 310 349 - -
Pumo9g01220 437 PANTHER LD24721P 3 429 IPR047150 -
Pumo9g01220 437 ProSiteProfiles TPR repeat profile. 223 256 IPR019734 GO:0005515
Pumo9g01220 437 Pfam Homodimerisation domain of SGTA 14 71 IPR032374 -
Pumo9g01220 437 SUPERFAMILY TPR-like 188 302 IPR011990 GO:0005515
Pumo9g01220 437 ProSiteProfiles TPR repeat profile. 189 222 IPR019734 GO:0005515
Pumo9g01220 437 SMART tpr_5 223 256 IPR019734 GO:0005515
Pumo9g01220 437 SMART tpr_5 257 291 IPR019734 GO:0005515
Pumo9g01220 437 SMART tpr_5 189 222 IPR019734 GO:0005515
Pumo9g01220 437 MobiDBLite consensus disorder prediction 363 397 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01220 188 287 U-box Gene Family AT3G07370 29.000 2.83e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01220 K16365 - gmx:100799770 758.829