Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01186 ATGGCTGCCACTGATGTGCAAGAGTATCTGATACTTTCATTGACAAGCTTGTGTTGTGATAAGATTGGAGTATGGGAGGCCATTAAAAAAAGAGAAGGTATCCAATTACTAATATCATTGCTTGGATTATCCAGTGAGCAGCATCAAGAGTACTCAGTTCAGTTGCTAGCAATCTTAACTGACCAGGTTGATGACAGCAAGTGGGCAATCACTGCTGCTGGAGGGATTCCACCATTGGTGCAGTTGTTGGAGACAGGATCACAGAAAGCAAGAGAAGAAGCAGCAAATGTTCTGTGGAGTTTGTGCTGTCACAGTGAAGATATTCGTGCTTGTGTTGAAAGTGCTGGAGCCATCCCGGCATTTTTGTGGCTTCTTAAGAGTGGTGGACCAAAAGGGCAGGAAGCTTCTGCCATGGCACTCACAAAGCTAGTTCGAGTAGCTGATTCTGCCACAATTAATCAGCTATTAGCATTGCTCCTAGGGGATTCTCCAAGCTCAAAAGCCCACATAATCCGAGTTTTAGGTCATGTTCTTACTATGGCTTCGCAGAATGATCTCCTTGAAAAGGGTTCTGCAGCTAATAAAGGCTTGAGATCTCTAGTTCAGGTCCTCAATTCATCAAATGAGGAAACCCAAGAATATGCAGCTTCAGTTCTAGCTGATTTATTTATCACAAGACAAGACATCTGTGATAGTCTTGCAACTGATGAGATTGTACTTTCTTGCATGAAGCTTTTGACTAGCAAAACTCAAGTTGTTGCCACTCAATCAGCTCGAGCATTAAGTGCTCTGTCTCGTCCAACAAAGAACAAGGCTGCAAATAAAATGTCTTATATTGTAGAGGGTGATGTTGAGCCACTAATCAAGTTAGCTAAAACATCCTCTGTTGATGCTGCTGAAACTGCTGTTGCTGCATTGGCCAATCTTCTCTTTGATCCTTTTATTGCTGCTGAGGCTCTAGCAGAAGATGTTGTTTCAGCTTTAACAAGAGTTCTGGCAGAAGGGACCTTGGAAGGTAAACAAAATGCATCTCGTGCACTTCATCAATTATTGAAGCATTTTCCAGTAGGTGATGTTCTCAAGGGTAACGCTCAATGCCGTTTCACTGTGCTTGCACTTGTTGATTCCTTAAGAGCTATGGATATGGATGGAACTGATGCTGCAGATGCTTTAGAAGTAATTGCACTGCTAGCCAGAACTAAACAGGGTGTCAACTTCACTTACCCTCCATGGTCGGCTCTGGCTGAAATACCATCAAGCTTAGAACTTCTTGTCTGCTGCCTGGCTGAGGGGCCTTCCCTTGTGCAAGACAAGGCAATTAAAATTCTATCTAGACTTTGTGGGGATCAGCCAGTTGTTCTTGGTGATTTGTTATCTGCTAGTTCCAAATCCATTGGTTCATTGGCTGATAGAATAATGAACTCCTCCAGTCTAGAAGTAAAAATTGGAGGTGCTGCCTTACTAATTTGTGCTGCAAAGGAGAAGAAAGAGCTTTCAATGGATTCACTTGATGCTTCTGGGTATCTAAAACCATTAATATATTCTTTAGTTGAAATGATAAAGCAGAGTTGTAGCTATTCTTCGTTAGAAATTGAAATTCTCACTTCTAAAGGTTTTATGGAGAGAAATGCTTTTCAAGAAGTTGATGAGTTTGATATTCCTGATCCAGCCACTGCCTTGGGAAGCACTATTGCCATGTGGTTGCTTTCAGTTATTGCTTCTTTCCATATAACGAGCAAGCTCACAATTATGGAAGCTGGTGGACTGGAAGCTCTCTCTGACAAACTTGCAAGACATACTTCAAATCCACAGGCAGAATATGAGGATACAGAAGGAATATGGATCAATGCCTTGCTCTTGGCCATTTTATTTCAAGATGCAAATGTCGTTCTATCTTCTGTCACAATGCGCATTATACCTTCTATCACTCTTCTGCTAAGATCTGATGAAGTAATTGATAAATATTTTGCTGCCCAGGCTATGGCTAGTCTTGTTTGTAATGGTAATAAGGGAATAGATCTTGCCATTGCGAATTCTGGTGCTGTTTCTGGATTGATAACTATTATTGGGCAGTCAGATATGCCTAATCTCATGGCTTTATCAGAAGAATTTTCTTTGGTACAAAACCCTGATCAAGTTGTTTTGGATCATCTTTTTGAAATTGAAGATGTAAAAGTGGGGTCTACCGCCAGGAAATCTATACCCCTCTTAGTGGATCTCCTGAGACCAATACCAGAAAGGCCTAGTGCTCCACCAGTTGCTGTTAGACTCTTGATATCCATTGCAGATGGAAGTGAGACCAATAAATTAATCCTGGCTGAAGCTGGAGCTCTGGAAGCTTTGAACAAATACCTGTCCTTGAGTCCTCAAGACTCAACTGAGGCGGCTATTTCCGAGTTATTGAGAATATTATTTTGCAATTCTGACCTTATTAAACACGAAGCATCAACTAATTCATTGAACCAACTCACAGCTGTTTTGCGTCTTGGATCAAGAAATGCTAGATATAGTGCCGCAAGAGCACTTAATGAACTTTTTGATGCCGACAACATTAGAGACTCAGAATTAGCTAAACAGGCCATTCAACCATTGGTTGACATGCTTAACACAACATCAGGTAATGAGCAGGAGGCTGCTCTCATGGCCTTGATCAAGTTAACTTCAGGAAATTCTTCAAAAGTATCTCTTCTTACTGATGTGGAAGGAAACCCACTTAAATGTTTATACAAAATACTGTCTTCTGCTTCATCCTTGGAACTGAAGAGCCATGCTGCTCAACTCTGCTTTGCTCTTTTTGGCAATAGCAAGATCAGAGCAGATCCAGTTGCCTCAGAATGCCTAGAACCCCTTATATCACTGATGCAGTCAGATTCTGAGACTGCAATAGAATCTGGGGTTTGTGCTTTTGAGAGATTATTGGAAGATGAACAACAGGTAGAGCTTGCAGCAGCCTACAATGTTGTGGATCTCCTTGTGAGCTTGGTTTCTGGTACAAACTATCAGCTTATCGAGGCTGCCATATCTGCTCTTATCAAATTGGGCAAAGACAGGACTCCAAGTAAAGTAGACATGGTGAAAGCTGGCATTATTGATAATTGTCTCAAGCTACTACAATTAGCACCTAGCTCTTTATGCTCCACAATAGCTGAGCTGTTTCGCATTTTAACTAATAGTAGTGCAATTGCAAGAAGTTCAGATGCTGCAGAAATTGTAGAACCTCTTTTCCATGTTTTGCTCCGTCGAGATTTCAACTTATGGGGACAGCATAGTGCCTTACAAGCACTTGTAAATATATTGGAGAAGCCTCAAAGTCTTGCAACCTTGAAGCTTACTCCAAGCCAAGTTATTGAACCCTTGATTTCTTTTCTGGAATCCCCATCCCAAGCTATTCAGCAGCTTGGCACAGAACTGTTGTCTCATCTTCTTGCACAGGAACATTTTCAGCAAGATATTACAACAAAGAATGCAGTTGTACCCCTCGTACAGCTTGCAGGAATTGGAATATTAAACTTACAGCAAACAGCGATAAAAGCATTGGAAAAAATTTCCACAAGTTGGCCAAAGGCAGTTGCTGATGCAGGAGGTATTTTTGAGCTTGCAAAGGTTATTATTCAAGAAGACCCTCAACCACCACATGCACTCTGGGAATCAGCTGCTTTAGTTCTCTCTAATGTATTACATTCCAATGCCGATTACTATTTTAAAGTTCCTGTGGTGGTTCTTGTAAAACTTTTGCACTCAACACTTGAGAGTACAATTAGCATAGCCCTTAATGCTTTAATAGTTCATGACAGAAGCGATGCTTCAAGTGCTGAGCAGATGATGGAAGCTGGAGTGATAGATGCTCTGTTGGACCTTTTAAGATCTCATCATTGTGAAGAAGCATCTGGTAGATTACTAGAAGCTTTATTTAACAATGTGAGAGTACGAGAGATGAAGGTGTCTAAGTATGCTATAGCACCTTTATCCCAGTATCTATTGGATCCGCAAACCAGATCACAGTCTGGCAAACTTCTTGCTGCTTTAGCTTTGGGAGATCTTTCCCAGCATGAAGGACATGCTAGATCTAGTGCCTCTGTTTCTGCATGTCGTGCATTGATAAGTTTACTTGAAGATCAGCCAACTGAAGAAATGAAGGTGGTGGCTATTTGTGCATTGCAAAACTTTGTCATGAACAGCAGGACCAATAGACGAGCTGTTGCAGAAGCTGGGGGCATACTGGTGATTCAGGAATTGCTGCTATCTCCAAACACAGAAGTTGCTGCACAAGCCGCTTTGCTGATCAAATTTTTGTTTTCTACCCATACACTGCAAGAATATGTGTCAAATGAGTTGATCAGGTCTTTGACAGCTGCACTGGAAAGAGAGTTATGGTCAACTGCCACAATCAATGAGGAGGTTTTGAGAACTCTACATGTGATATTCATGAACTTCCCTAAGCTCCACACATCTGAAGCAGCAACTCTTTGCATTCCTCATTTGGTAGGGGCACTTAAATCTGGTGGTGAAGCGGCTCAGGACTCTGTACTTGACACGTTTTGCTTGCTAAGACAATCTTGGTCAACTATGCCAATAGATATAGCTAAGTCTCAAGCTATGATTGCTGCTGAAGCCATCCCCATTTTGCAAATGCTCATGAAAACCTGCCCGCCTAGTTTCCATGAGAGGGCAGATACTCTTCTGCACTGCTTACCAGGTTGTTTGACTGTCACCATTAAGCGTGGAAACAACCTCAAACAAACTATGGGAAGCACTAATGCATTCTGCCGGTTAACAATAGGCAATGGTCCTCCAAAACAAACCAAGGTGGTGAATCATAGTACTTCTCCAGAATGGAAAGAAGGATTCACTTGGGCATTTGATGTACCTCCAAAGGGCCAAAAGCTACATATCATATGCAAAAGCAAGAATACTTTTGGGAAGACAACTCTTGGAAGAGTTACTATCCAAATTGATAAAGTTGTATCAGAGGGGGTTTATAGTGGATTATTCAGTCTTAATCATGATGGTAACAAAGATGGTTCTTCCCGAACACTTGAAATTGAGATTATATGGTCCAACAGGATTTCCAATGATGACATTTGA 5085 0.4146 MAATDVQEYLILSLTSLCCDKIGVWEAIKKREGIQLLISLLGLSSEQHQEYSVQLLAILTDQVDDSKWAITAAGGIPPLVQLLETGSQKAREEAANVLWSLCCHSEDIRACVESAGAIPAFLWLLKSGGPKGQEASAMALTKLVRVADSATINQLLALLLGDSPSSKAHIIRVLGHVLTMASQNDLLEKGSAANKGLRSLVQVLNSSNEETQEYAASVLADLFITRQDICDSLATDEIVLSCMKLLTSKTQVVATQSARALSALSRPTKNKAANKMSYIVEGDVEPLIKLAKTSSVDAAETAVAALANLLFDPFIAAEALAEDVVSALTRVLAEGTLEGKQNASRALHQLLKHFPVGDVLKGNAQCRFTVLALVDSLRAMDMDGTDAADALEVIALLARTKQGVNFTYPPWSALAEIPSSLELLVCCLAEGPSLVQDKAIKILSRLCGDQPVVLGDLLSASSKSIGSLADRIMNSSSLEVKIGGAALLICAAKEKKELSMDSLDASGYLKPLIYSLVEMIKQSCSYSSLEIEILTSKGFMERNAFQEVDEFDIPDPATALGSTIAMWLLSVIASFHITSKLTIMEAGGLEALSDKLARHTSNPQAEYEDTEGIWINALLLAILFQDANVVLSSVTMRIIPSITLLLRSDEVIDKYFAAQAMASLVCNGNKGIDLAIANSGAVSGLITIIGQSDMPNLMALSEEFSLVQNPDQVVLDHLFEIEDVKVGSTARKSIPLLVDLLRPIPERPSAPPVAVRLLISIADGSETNKLILAEAGALEALNKYLSLSPQDSTEAAISELLRILFCNSDLIKHEASTNSLNQLTAVLRLGSRNARYSAARALNELFDADNIRDSELAKQAIQPLVDMLNTTSGNEQEAALMALIKLTSGNSSKVSLLTDVEGNPLKCLYKILSSASSLELKSHAAQLCFALFGNSKIRADPVASECLEPLISLMQSDSETAIESGVCAFERLLEDEQQVELAAAYNVVDLLVSLVSGTNYQLIEAAISALIKLGKDRTPSKVDMVKAGIIDNCLKLLQLAPSSLCSTIAELFRILTNSSAIARSSDAAEIVEPLFHVLLRRDFNLWGQHSALQALVNILEKPQSLATLKLTPSQVIEPLISFLESPSQAIQQLGTELLSHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAIKALEKISTSWPKAVADAGGIFELAKVIIQEDPQPPHALWESAALVLSNVLHSNADYYFKVPVVVLVKLLHSTLESTISIALNALIVHDRSDASSAEQMMEAGVIDALLDLLRSHHCEEASGRLLEALFNNVRVREMKVSKYAIAPLSQYLLDPQTRSQSGKLLAALALGDLSQHEGHARSSASVSACRALISLLEDQPTEEMKVVAICALQNFVMNSRTNRRAVAEAGGILVIQELLLSPNTEVAAQAALLIKFLFSTHTLQEYVSNELIRSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGGEAAQDSVLDTFCLLRQSWSTMPIDIAKSQAMIAAEAIPILQMLMKTCPPSFHERADTLLHCLPGCLTVTIKRGNNLKQTMGSTNAFCRLTIGNGPPKQTKVVNHSTSPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKTTLGRVTIQIDKVVSEGVYSGLFSLNHDGNKDGSSRTLEIEIIWSNRISNDDI 1694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01186 1694 Gene3D C2 domain 1566 1692 IPR035892 -
Pumo9g01186 1694 Pfam C2 domain 1567 1666 IPR000008 -
Pumo9g01186 1694 Pfam Armadillo/beta-catenin-like repeat 67 102 IPR000225 GO:0005515
Pumo9g01186 1694 SUPERFAMILY ARM repeat 11 689 IPR016024 -
Pumo9g01186 1694 ProSiteProfiles C2 domain profile. 1547 1664 IPR000008 -
Pumo9g01186 1694 SMART C2_3c 1567 1663 IPR000008 -
Pumo9g01186 1694 SUPERFAMILY ARM repeat 1172 1564 IPR016024 -
Pumo9g01186 1694 Gene3D - 1148 1355 IPR011989 -
Pumo9g01186 1694 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 1 1688 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Pumo9g01186 1694 Gene3D - 721 909 IPR011989 -
Pumo9g01186 1694 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 74 116 IPR000225 GO:0005515
Pumo9g01186 1694 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1565 1671 IPR035892 -
Pumo9g01186 1694 Gene3D - 419 715 IPR011989 -
Pumo9g01186 1694 SUPERFAMILY ARM repeat 735 1103 IPR016024 -
Pumo9g01186 1694 Gene3D - 187 394 IPR011989 -
Pumo9g01186 1694 SMART arm_5 105 145 IPR000225 GO:0005515
Pumo9g01186 1694 SMART arm_5 975 1015 IPR000225 GO:0005515
Pumo9g01186 1694 SMART arm_5 20 61 IPR000225 GO:0005515
Pumo9g01186 1694 SMART arm_5 312 352 IPR000225 GO:0005515
Pumo9g01186 1694 SMART arm_5 184 224 IPR000225 GO:0005515
Pumo9g01186 1694 SMART arm_5 1393 1433 IPR000225 GO:0005515
Pumo9g01186 1694 SMART arm_5 63 103 IPR000225 GO:0005515
Pumo9g01186 1694 SMART arm_5 765 805 IPR000225 GO:0005515
Pumo9g01186 1694 SMART arm_5 847 888 IPR000225 GO:0005515
Pumo9g01186 1694 SMART arm_5 934 974 IPR000225 GO:0005515
Pumo9g01186 1694 SMART arm_5 1267 1308 IPR000225 GO:0005515
Pumo9g01186 1694 SMART arm_5 271 311 IPR000225 GO:0005515
Pumo9g01186 1694 SMART arm_5 1102 1143 IPR000225 GO:0005515
Pumo9g01186 1694 CDD C2 1568 1658 - -
Pumo9g01186 1694 Gene3D - 2 186 IPR011989 -
Pumo9g01186 1694 Gene3D - 910 1147 IPR011989 -
Pumo9g01186 1694 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 732 776 IPR000225 GO:0005515
Pumo9g01186 1694 Gene3D - 1356 1564 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01186 Pumo-Chr9 35505626 35513275 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01186 6 204 U-box Gene Family AT3G46510 26.126 4.94e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01186 - - gmx:100780150 3086.2