Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01185 ATGTCAAAGTCTCCCTCTCATGAACAGCGGCAGTCCATTTATTCTGCCTCTCAGCCAGGGGAGTTTAATGAGGCAACAGGAATGGATGATCCAGAATCTACAATGGCAACGGTTGCTAATTTTGTGGAGCAACTGCATGCCAACTTGTCATCACCAGTTGAGAAAGAAATTATTACAGCACGCTTGCTAGGTATTGCCAGGAGAAGAAAGGATGTTAGAGCACTCATCGGTTCTCATTCCCAAGCCATGCCATTGTTCATAAGCATTCTCAGAAATGGAACCCCTCTTGCAAAAGTTAATGTTGCTTCCACTCTCAGTGTCCTGTGCAAAGATGAAGACTTGAGGTTAAAAGTACTTCTTGGTGGCTGTATCCCACCATTATTGTCACTTTTAAATTATGAATCCACCGATGCCAGGAAGGCAGCAGCTGAAGCGATATATGAAGTTTCCTCGGGTGGTCTTTCTGATGATCATGTTGGTATGAAAATTTTTGTTACAGAAGGTGTAGTTCCAACCTTATGGAATCAACTAAATCCAAAGAACAAGGAAGACAAAATTGTGGAGGGTTTTATTACTGGAGCATTAAGAAATCTTTGTGGTGACAAAGACGGCTACTGGAAAGCAACATTAGAAGCTGGAGGTGTGGATATCATAGTAGGGCTCTTGTCTTCAGATAATGCTGTTTCTCAGTCAAATGCAGCTTCTCTATTGGCACGTTTAATGCTGGCATTCAGTGATAGCATTCCCAAAGTAATAGACTCTGGAGCAGTCAAAGCTTTACTTCAGCTTGTTGGTCGGGAAAATGACATTTCTGTAAGAGCTAGTGCTGCTGATGCCCTAGAGGCCCTCTCTTCAAAGTCTACCAAGGCTAAAAAGGTCATTGTTAATGCAGATGGTATTCCAATCCTTATTGGAGCTATAGTTGCTCCTTCTAATGAGTGTATGCAAGGTGATGGTGGCCAGGCTCTTCAGGAGCATGCAACTCGAGCTTTAGCCAATATCTGTGGTGGCATGTCTGCTTTAATACTATATCTTGGAGAACTTTCACGTTCTCCTCGCCTTGATGCACCAGTTGGTGATATAATTGGCGCTCTTGCTTATACACTCATGGTCTTTGAGGAAAAAGTTGATGTTGATGAGAAACATTTTGATGCAACTCAGATAGAGGATATTCTAGTAACTCTTTTAAAGCCTCGGGACAACAAACTAATTCAAGAGCGTGTCCTCGAGGCTATGGCTAGCCTATATGGAAACGTCTGTCTCTCAAAGTGGCTCATTCAGGCAGATTCAAAAAGGTTCTGA 1302 0.4263 MSKSPSHEQRQSIYSASQPGEFNEATGMDDPESTMATVANFVEQLHANLSSPVEKEIITARLLGIARRRKDVRALIGSHSQAMPLFISILRNGTPLAKVNVASTLSVLCKDEDLRLKVLLGGCIPPLLSLLNYESTDARKAAAEAIYEVSSGGLSDDHVGMKIFVTEGVVPTLWNQLNPKNKEDKIVEGFITGALRNLCGDKDGYWKATLEAGGVDIIVGLLSSDNAVSQSNAASLLARLMLAFSDSIPKVIDSGAVKALLQLVGRENDISVRASAADALEALSSKSTKAKKVIVNADGIPILIGAIVAPSNECMQGDGGQALQEHATRALANICGGMSALILYLGELSRSPRLDAPVGDIIGALAYTLMVFEEKVDVDEKHFDATQIEDILVTLLKPRDNKLIQERVLEAMASLYGNVCLSKWLIQADSKRF 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01185 433 Gene3D - 157 430 IPR011989 -
Pumo9g01185 433 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 255 299 IPR000225 GO:0005515
Pumo9g01185 433 MobiDBLite consensus disorder prediction 1 22 - -
Pumo9g01185 433 SMART arm_5 156 200 IPR000225 GO:0005515
Pumo9g01185 433 SMART arm_5 69 110 IPR000225 GO:0005515
Pumo9g01185 433 SMART arm_5 111 151 IPR000225 GO:0005515
Pumo9g01185 433 SMART arm_5 287 336 IPR000225 GO:0005515
Pumo9g01185 433 SMART arm_5 244 285 IPR000225 GO:0005515
Pumo9g01185 433 SMART arm_5 201 242 IPR000225 GO:0005515
Pumo9g01185 433 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 10 432 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Pumo9g01185 433 SUPERFAMILY ARM repeat 72 311 IPR016024 -
Pumo9g01185 433 MobiDBLite consensus disorder prediction 1 30 - -
Pumo9g01185 433 Gene3D - 29 156 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01185 Pumo-Chr9 35504065 35505611 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01185 41 263 U-box Gene Family AT2G23140 28.571 8.64e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01185 - - gmx:100796864 801.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01185 9 35504065 35505611 Pumo9g01185 9 35504065 35505611 ECH