Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01183 ATGGTCGCAGCACAACTCCACTTACCCCCCGGATTCCGATTCCACCCCACCGACGAAGAACTCGTCGTTCACTACCTCTGCCGCAAATGCGCTTCGCAACAAATCGCGGTTCCGATAATCGCCGAAATCGACCTCTACAAGTACGACCCATGGGACCTTCCAGGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACACCGAGGGACCGGAAGTACCCGAACGGTTCACGGCCGAACCGGTCCGCGGGAACCGGGTACTGGAAGGCAACCGGAGCGGATAAACCGATTGGCAAACCGAAACCGGTTGGGATCAAGAAAGCGTTGGTGTTTTACTCTGGAAAAGCGCCCAAGGGAGAGAAAACAAACTGGATCATGCACGAGTATCGTCTCGCCGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTGAGGCTTGATGACTGGGTGCTGTGTCGCATTTACAACAAGAAAGGTGCAATTGGGAAGCAACCACCACCGCCGAGTGGGGTCCGCAAAATTGAATTTTCCGAAGTGGAGGACGAGAAGCCGGAGATTCCGGCGCCGCTGCCGCCGAATACGGTGGCGGATTGCGTGTACTTCGAGGCTTCCGACTCGGTGCCGCGGCTGCACACGACGGACTCGAGCGGTTCCGAGCATGTGGTGTCGCCGGAGTTTGCGAGCGAGGTGCAGAGCGAGCCGAAGAGGGGCAGCAACAACGAGTTTGCGTATAATTACGTGGATGCCACTCTCGGGAATAATCAGATGTCGCCGCTGCAGGATATCTTCATGTACCTCTCCAAGCCATTCTGA 816 0.5564 MVAAQLHLPPGFRFHPTDEELVVHYLCRKCASQQIAVPIIAEIDLYKYDPWDLPGMALYGEKEWYFFTPRDRKYPNGSRPNRSAGTGYWKATGADKPIGKPKPVGIKKALVFYSGKAPKGEKTNWIMHEYRLADVDRSVRKKNSLRLDDWVLCRIYNKKGAIGKQPPPPSGVRKIEFSEVEDEKPEIPAPLPPNTVADCVYFEASDSVPRLHTTDSSGSEHVVSPEFASEVQSEPKRGSNNEFAYNYVDATLGNNQMSPLQDIFMYLSKPF 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01183 271 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
Pumo9g01183 271 MobiDBLite consensus disorder prediction 211 240 - -
Pumo9g01183 271 PANTHER NAC TRANSCRIPTION FACTOR 56 8 203 - -
Pumo9g01183 271 SUPERFAMILY NAC domain 3 158 IPR036093 GO:0003677|GO:0006355
Pumo9g01183 271 FunFam NAC transcription factor 17 162 - -
Pumo9g01183 271 Gene3D NAC domain 17 162 IPR036093 GO:0003677|GO:0006355
Pumo9g01183 271 Pfam No apical meristem (NAM) protein 9 132 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01183 Pumo-Chr9 35453564 35455705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01183 2 271 NAC Transcription Factor Family AT1G01720 71.972 1.34e-148 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo9g01183 NAM 1.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01183 - - gmx:100170714 499.59