Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01181 ATGGAACGTGAAGAAGGCAAACAACCTCCCCAACAAAAAACCCCATTACACAATCAACTTGAGCAAGTTAATTCTGATAACAATGTTGCTCTAGAAAATGACTTGCAAGAGCAAAGTGGGACATTCACAACTTTTGCATCATTTGAAAGTGAAACTGATCAGAGTGAGTCCTCTTTTGGTGACAATGATTATGATGATGATGGGGATGCTGATTTTTTCCTGAGCCAAGAGTTCGAATCGGAACTTCAATTTCTTGAGAGTGAAGGAAGCAATGACGACAACGACGATGACGAAGATATGGAAGAAGATGAGATTGATGTGGATGAATTGACTTATGAAGAGTTGATTGAGTTGGGAGATTTTATAGGGCAAGAGAAGAGAGGGTTGTCAGCACATGAAATTTGTTCATGCTTGCAATCTCACACTTTCCATTCTGCTGAAAACAGAAGTGGAATTGATCGTTGTGTGATTTGTCAGGTTGAATATGAAGAAGGTGAAGCCTTGGTGGCAATTCAGTGTGAGCATCCTTATCACACAGATTGCATAAGCAAGTGGCTTCAAATTAAGAAGGTTTGCCCAATATGTAACACTGAAATTTCAGCTCCCAAGATGGTTAGTTAA 621 0.3961 MEREEGKQPPQQKTPLHNQLEQVNSDNNVALENDLQEQSGTFTTFASFESETDQSESSFGDNDYDDDGDADFFLSQEFESELQFLESEGSNDDNDDDEDMEEDEIDVDELTYEELIELGDFIGQEKRGLSAHEICSCLQSHTFHSAENRSGIDRCVICQVEYEEGEALVAIQCEHPYHTDCISKWLQIKKVCPICNTEISAPKMVS 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01181 206 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 19 200 IPR033276 GO:0004842|GO:0016567|GO:0046621
Pumo9g01181 206 SUPERFAMILY RING/U-box 154 202 - -
Pumo9g01181 206 SMART ring_2 155 195 IPR001841 -
Pumo9g01181 206 MobiDBLite consensus disorder prediction 11 55 - -
Pumo9g01181 206 MobiDBLite consensus disorder prediction 56 72 - -
Pumo9g01181 206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 204 IPR013083 -
Pumo9g01181 206 Pfam RING-H2 zinc finger domain 153 196 IPR024766 GO:0008270
Pumo9g01181 206 FunFam E3 ubiquitin ligase BIG BROTHER-related 121 202 - -
Pumo9g01181 206 ProSiteProfiles Zinc finger RING-type profile. 155 196 IPR001841 -
Pumo9g01181 206 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01181 Pumo-Chr9 35412345 35413172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01181 93 199 C3H Transcription Factor Family AT3G63530 47.748 7.88e-29 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01181 K19045 - gmx:100780686 295.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01181 9 35412345 35413172 Pumo9g01181 9 35412345 35413172 ECH
Pumo10g01252 10 16415331 16416244 Pumo9g01181 9 35412345 35413172 PCT