Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01169 ATGTCGACGCAGAATCGCCGTTCGTCGTTTACTTCCTCGACGGCGTCGTCTTTGGCGAAAGCGAAACGACATCCGTCGGTGTCGTCGGCGAAGATGAAGGTGGTTCCTTCTACGAAGAGAGCGCCTCTCGCCAACCTCACAAATCAGAGGAACGCGCCTTCTTCTTCTTCTTCTTTGGTGCAAGGTTCAATTAAAGTTGCCAAGACCAAGAAAGAGACTGCTGCAAGAACCAGCATCACAAAATCAATAATTTCTGGGAACAAATTACCCGAGTTAAAATCTGTTAACTCAAGCTCTGCTGTTATTCCAAAGGCTAATTCTTTACCACAAAGGAAGGATGCTGCTCCCACAGTTGCCACATTCGGGGTGCCTCTTCGTAGCAGCATCATCGATGTTTCTCCTAGTAAATCAGATGGAAGGTCCGTTTCTATGGATGAGACAATGTCTTCTTGTGATTCTATCAAGAGTCCTGATGAAGTTGAATATCTGGATAACAGGGATGTTTCAGATGTTGATTCAATTCAGAGAAAGATAATAAGCAATTTGAACATTTCTGATACCACAGAGCCAGAAGTAAAAGTATGTAGTAGGGAAATAATTGTTGAGTTGGAAAGAGAGGACAAGATTGTCAATATCGACAACATTTACTCCGATCCGCAGCTTTGTGCAACCTATGTTTGTGATATCTACAAGCACCTACGTGAATCTGAGGAAAAGAAAAGGCCTTCTACTGACTTCATGGACAGAATTCAGAAGGACATAAATGTTAGCATGCGCGCTATATTGGTTGACTGGCTTGTTGAGGTGGCTGAGGAGTATCGTCTTGTACCTGATACATTGTATTTGACTGTGAACTACTTAGATCGGTATCTTTCAGGGAATGCTATGAATAGGCAAAGGTTACAATTACTTGGTGTGTCATGCATGATGATTGCCTCTAAATATGAGGAGATTTGTGCACCTCAGGTGGAAGAATTTTGTTATATAACTGACAATACTTACTTAAAAGAAGAGGTTTTGAAAATGGAATCTGCTGTCTTGAATTATCTTAAGTTCGAAATGACAGCCCCAACAGTTAAATGTTTCTTAAGACGATTTGTTCGTGCAGCTGCTCATGATGTCCAGGAGATCCCTTCACTTCAACTGGAGTGCCTAACCAACTTTATTGCCGAATTATCTCTCTTGGAGTACAGCATGCTGTGTTATCCTCCATCACTGATAGCTGCTTCTGCAATTTTCCTTGCCAGATTTATACTTTTTCCTTCAAAGAAACCATGGAATTCCACATTGCAGCATTACACGCAATACCGGCCTTCTGACTTGTGTGCATGTGTAAAAGATCTCCATCGTCTTAGTTGCAGCAGCCATGATTCTAATTTACCTGCAATCAGAGATAAATACAGTCAGCATAAGGTAATTTTTCTAAGTACAAACAAAATTGATATGATTTGTTTGTTTTTTCCTTTTAATCAGGTTGCTTACTTCCTCCTCACACTTCACTTGTGA 1506 0.4104 MSTQNRRSSFTSSTASSLAKAKRHPSVSSAKMKVVPSTKRAPLANLTNQRNAPSSSSSLVQGSIKVAKTKKETAARTSITKSIISGNKLPELKSVNSSSAVIPKANSLPQRKDAAPTVATFGVPLRSSIIDVSPSKSDGRSVSMDETMSSCDSIKSPDEVEYLDNRDVSDVDSIQRKIISNLNISDTTEPEVKVCSREIIVELEREDKIVNIDNIYSDPQLCATYVCDIYKHLRESEEKKRPSTDFMDRIQKDINVSMRAILVDWLVEVAEEYRLVPDTLYLTVNYLDRYLSGNAMNRQRLQLLGVSCMMIASKYEEICAPQVEEFCYITDNTYLKEEVLKMESAVLNYLKFEMTAPTVKCFLRRFVRAAAHDVQEIPSLQLECLTNFIAELSLLEYSMLCYPPSLIAASAIFLARFILFPSKKPWNSTLQHYTQYRPSDLCACVKDLHRLSCSSHDSNLPAIRDKYSQHKVIFLSTNKIDMICLFFPFNQVAYFLLTLHL 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01169 501 SUPERFAMILY Cyclin-like 357 477 IPR036915 -
Pumo9g01169 501 CDD CYCLIN_AtCycA-like_rpt2 357 471 - -
Pumo9g01169 501 Pfam Cyclin, C-terminal domain 357 474 IPR004367 -
Pumo9g01169 501 FunFam Mitotic cyclin 6 242 342 - -
Pumo9g01169 501 Pfam Cyclin, N-terminal domain 228 354 IPR006671 -
Pumo9g01169 501 MobiDBLite consensus disorder prediction 1 63 - -
Pumo9g01169 501 SUPERFAMILY Cyclin-like 217 354 IPR036915 -
Pumo9g01169 501 Gene3D - 228 472 - -
Pumo9g01169 501 Gene3D - 242 355 - -
Pumo9g01169 501 CDD CYCLIN_AtCycA_like_rpt1 218 353 - -
Pumo9g01169 501 MobiDBLite consensus disorder prediction 132 153 - -
Pumo9g01169 501 ProSitePatterns Cyclins signature. 259 290 IPR006671 -
Pumo9g01169 501 MobiDBLite consensus disorder prediction 1 23 - -
Pumo9g01169 501 PIRSF Cyclin_A_B_D_E 5 483 IPR046965 GO:0016538|GO:0044772
Pumo9g01169 501 FunFam Cyclin A1 344 477 - -
Pumo9g01169 501 SMART Cyclin_C_2 357 478 IPR004367 -
Pumo9g01169 501 MobiDBLite consensus disorder prediction 41 63 - -
Pumo9g01169 501 PANTHER CYCLINS 166 469 IPR039361 -
Pumo9g01169 501 SMART cyclin_7 361 450 IPR013763 -
Pumo9g01169 501 SMART cyclin_7 264 348 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01169 Pumo-Chr9 35124405 35128237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01169 4 476 Core Cell Cycle Gene Families AT1G44110 58.884 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01169 K06627 - gmx:100776207 801.971