Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01160 ATGAGGAATCCATCATCAACAACACCAACCAAGAACAAGAAGAATAGTAGAAACAATACCAGTAATATCAACAACAACAACATTGGTAGTAGCAGCAGCAACATCAACAACAGTACCAACACTCCATGCTGCAACAAGGTTGGTTTGAAGCGAGGGCCATGGACGCCAGAAGAAGACGAAGTGTTAGCAAATTACATCAAGAAAGAAGGAGAAGGACGCTGGAGAACGCTCCCAAAACGTGCTGGCCTTCTCCGCTGCGGCAAAAGCTGCCGCCTCCGCTGGATGAACTACCTCCGCCCCTCCGTCAAGCGCGGCCACATCGCCCCCGACGAGGAAGATCTCATCCTCCGCCTCCACCGCCTCCTCGGCAACCGGTGGTCTTTGATAGCTGGGAGGATTCCTGGAAGAACAGATAATGAAATAAAGAACTATTGGAATACCCATCTAAGTAAGAAGCTTATTAGCCAAGGGATTGATCCAAGAACCCACAAGCCTCTCAACCCACCATCCATGAATATTCCTTCTTCTTCTACTACTTTTCCACCTTCTAAACCTCCTCCAATGATCACCTCCAACTATAACCCTTATCATCAAGACCTCACTAATATTGTTAACCAAGGAGTTCATCTTCATCATCTGGGTCAACATCATCATCAGGTTTCTAATCCTTATGATAACTCAGTAGCTGCTGCCACCGATGATGTTTCTGCAATGGGTTTCATGGACAACGACGATTGCAACGATGATATGGACATCAATTATTACTCGGACGATGTCTTCACTTCCTTCCTCGACTCTTTGATCAACGATGATGCTTTTGCAGCGCAGCACCACGTGCAAACAGAGATCCCCAGTGAGCGTAGCATTAATCCACTGCCGTGTGATGATCGCGTTGATGATCATCATCCTCTGGGTTCAATCACCACCGCTTCTGCACCGCAAGGTTACAATGATGACCTTGGGGTTCTGTGGGAATCGCCACTCGTGCCTGCTGCTACTTTCATCACTAAGAGGGTTCATGATCACCACAATCAATAG 1038 0.473 MRNPSSTTPTKNKKNSRNNTSNINNNNIGSSSSNINNSTNTPCCNKVGLKRGPWTPEEDEVLANYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNPPSMNIPSSSTTFPPSKPPPMITSNYNPYHQDLTNIVNQGVHLHHLGQHHHQVSNPYDNSVAAATDDVSAMGFMDNDDCNDDMDINYYSDDVFTSFLDSLINDDAFAAQHHVQTEIPSERSINPLPCDDRVDDHHPLGSITTASAPQGYNDDLGVLWESPLVPAATFITKRVHDHHNQ 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01160 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 98 IPR017930 -
Pumo9g01160 345 SUPERFAMILY Homeodomain-like 48 145 IPR009057 -
Pumo9g01160 345 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 41 179 - -
Pumo9g01160 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 99 153 IPR017930 -
Pumo9g01160 345 CDD SANT 109 149 IPR001005 -
Pumo9g01160 345 Gene3D - 48 104 - -
Pumo9g01160 345 ProSiteProfiles Myb-like domain profile. 99 149 IPR001005 -
Pumo9g01160 345 Gene3D - 108 170 - -
Pumo9g01160 345 MobiDBLite consensus disorder prediction 1 39 - -
Pumo9g01160 345 SMART sant 50 100 IPR001005 -
Pumo9g01160 345 SMART sant 103 151 IPR001005 -
Pumo9g01160 345 Pfam Myb-like DNA-binding domain 109 149 IPR001005 -
Pumo9g01160 345 Pfam Myb-like DNA-binding domain 51 98 IPR001005 -
Pumo9g01160 345 MobiDBLite consensus disorder prediction 158 183 - -
Pumo9g01160 345 FunFam Myb transcription factor 48 104 - -
Pumo9g01160 345 FunFam transcription repressor MYB5-like 108 175 - -
Pumo9g01160 345 CDD SANT 53 98 IPR001005 -
Pumo9g01160 345 ProSiteProfiles Myb-like domain profile. 46 98 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01160 Pumo-Chr9 34896678 34898068 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01160 41 270 MYB Transcription Factor Family AT3G13540 58.261 1.24e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo9g01160 Myb_DNA-binding 2.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01160 K09422 - gmx:100782308 507.294