Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01159 ATGTCGAGGATATGCGTGAAGAATCTCCCAAAAGTTGTCACCGAGGATGAACTGCGGGAATTCTTTTCTGGGAAAGGAGGAATAATCACCGATGTCAAGCTTATGCGTACCAAAGACGGTAAGAGTCGCCAGTTTGCGTTTATCGGATATCGGACTGAAGATGAAGCTCAGGAAGCCATTCGATATTTCAATAAAAATTTCCTTCGCACATCTAAAATTGTTTGTGAGGTGGCTCGAAAACTTGGGGATGAAAATCTTCCTCGTCCATGGAGTCGACATTCGAAGAAGAAAGATGATGATAAAGTGACCGCCCCTGATGTGGAGAAACGTGCTAGAGCTAAGGGACAAGGAGAGAATTTGAAGGGCGGTGTTGGTGTTGATGTTGATGTTGATGACCCGCAGCTTCAGGATTTTCTTCAGGTCATGCAGCCTCGGGTTAAGTCTAAAATGTGGGCGAATGATACGTCTATTGTGACCAATGTTGGCAACAAACAAGCAATGCCAAATAAGGATAACGAAGGTGCATCGATTGCGATTGATCAGAGTGGCTCATTAGAAGATGGGTTTCCAGAGAATTCTGAACCCAACAAGTCACATGAGCCTGAACGTGGTGAAGTCATTTCTGATATGGATTATTTCAAGAGTAGGGTGACGAAAGAGTGGTCAGATTCTGAAAGTAGTGATGATGAAGACGATGAAGATGACAATGATTCCTCACGCATTGAGAATGATGACAAAGATGATCATAGTGATGCTAGTGAAGATGAAAAAAATTGTGATCCAAGAAATGGTGCTCGAGAGATAGACCTAGAGGGCAAAGAAGATACTAGTGGAGAGGATGTTACCCATGGAAAGGCTCAAGTGAATGTGACTGAGCAAGGGAGGCAATTATCAAAACCAGAAGATGAGAAAGGAGTTTTTGAGTCCTGTCGGTTGTTTGTCCGTAATCTGCCATATACAACCACTGAGGAGGAACTGGAAGAACATTTCAGTCACATTGGTAGTGTCTCACAGGTTCATCTAGTTGTTGATAAAGATACAAAACGATCCAAAGGAATAGCATATATTCTTTATAAAAATCCAGAATTTGCAGCCAGGGCTCTAGAAGAGTTAGACAATACAATCTTTCAAGGAAGATTATTGCATGTAATGCCAGCCTTACAAAGACATTCAGATAATCAAGAGAACAATGTTTTGAAGGACCAAAGCTCTAAAACCCTCAAACAACAGAGAGAGGATAAAAGGAAAGCAGATGAAGCTAGCGGAGATACTAGAGCATGGAATAGTCTGTTCATGCGCCCTGATACAGTTGTGGAAAACATTGCTCGGAAATATGGTGTTAATAAAAGTGAGTTACTTGACCGAGAAGCTGATGATCTTGCTGTACGTATTGCTCTGGGAGAGACTCAAGTGATTTCAGAGACAAAGAAGGCATTTAAAAATGCTGGAGTGAATGTGGAGGTTTTGGAGGAACTTGCTAATAAAAAAATAGATGGATTAAAAAGAAGTAATCATGTGCTTTTAGTGAAGAACTTGCCATATGGTTCTACAGAAAATGAACTTGCAAAGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCTCCAACAAAGACATTGGCGCTGGTTGTTTTCCTCGAACCAGCGGAAGCTCGAGCAGCTTTTAGAGGTTTAGCTTACAAGCGTTACAAGGATGCTCCATTATACTTGGAGTGGGCTCCTTCCAATATTCTTAGCCAAAGTTCAACATCTAAAAATAATGAAATGAGTGGTGCAATTGGTGAAAATGATGCCAAGAGGCAGATATTGGAGCAACAAGTGGAAAGAATAACAGATGTGGATATTGATCCAGACAGAGTACAGGCTCGGTCCCTGTTTGTCAAGAACCTAAATTTCAAGACTACAGATGAAAATCTGAGGAAACATTTTAGTGAACACATGAAAGAGGGAAGAATTTTGAGTGTCAAGGTGAAGAAGCATTTGAAAAATGGGAAAAATGTATCTATGGGGTTTGGATTTCTTGAGTTTGACTCCCCTGAAACTGCTACAAATGTTTGCAGAGATTTACAGGGGACAGTTTTGGACAGCCATGCTCTTATTTTACAACCTTGTCATGTCAAGAATGATGGGCAAAAACATAAGTCAATTGAGAAGGATAAGAGTTCAACAAAATTGCTCATAAAAAATGTTGCTTTTGAGGCAACAGAGAAGGATCTGAGACGATTGTTTAGCCCTTTTGGCCAGATTAAAAGCTTAAGGTTGCCAATGAAGTTTGGAAGCCATAGAGGCTTTGCTTTTGTAGAGTATGTGACCCAGCAGGAGGCAGAAAATGCTCTCAAAGCACTTTCAAGCACCCATCTCTATGGGAGGCATCTGGTGATAGAGAGAGCAAAAGAAGGTGAGAGTTTGGAAGAACTGCGGGCTAAAACAGCTGCCCAATTTAGTGATGAACAGAATGGATTTCAAAGTGCTACTAAATTATCCAAGAAAAGGAAGCAAGTTGACTTCTTAGATGAAGGGAAGATGAAGTTTGGAAGAGTTGCTGACTAG 2556 0.4081 MSRICVKNLPKVVTEDELREFFSGKGGIITDVKLMRTKDGKSRQFAFIGYRTEDEAQEAIRYFNKNFLRTSKIVCEVARKLGDENLPRPWSRHSKKKDDDKVTAPDVEKRARAKGQGENLKGGVGVDVDVDDPQLQDFLQVMQPRVKSKMWANDTSIVTNVGNKQAMPNKDNEGASIAIDQSGSLEDGFPENSEPNKSHEPERGEVISDMDYFKSRVTKEWSDSESSDDEDDEDDNDSSRIENDDKDDHSDASEDEKNCDPRNGAREIDLEGKEDTSGEDVTHGKAQVNVTEQGRQLSKPEDEKGVFESCRLFVRNLPYTTTEEELEEHFSHIGSVSQVHLVVDKDTKRSKGIAYILYKNPEFAARALEELDNTIFQGRLLHVMPALQRHSDNQENNVLKDQSSKTLKQQREDKRKADEASGDTRAWNSLFMRPDTVVENIARKYGVNKSELLDREADDLAVRIALGETQVISETKKAFKNAGVNVEVLEELANKKIDGLKRSNHVLLVKNLPYGSTENELAKMFGKFGSLDKIILPPTKTLALVVFLEPAEARAAFRGLAYKRYKDAPLYLEWAPSNILSQSSTSKNNEMSGAIGENDAKRQILEQQVERITDVDIDPDRVQARSLFVKNLNFKTTDENLRKHFSEHMKEGRILSVKVKKHLKNGKNVSMGFGFLEFDSPETATNVCRDLQGTVLDSHALILQPCHVKNDGQKHKSIEKDKSSTKLLIKNVAFEATEKDLRRLFSPFGQIKSLRLPMKFGSHRGFAFVEYVTQQEAENALKALSSTHLYGRHLVIERAKEGESLEELRAKTAAQFSDEQNGFQSATKLSKKRKQVDFLDEGKMKFGRVAD 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01159 851 MobiDBLite consensus disorder prediction 85 116 - -
Pumo9g01159 851 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 727 794 IPR000504 GO:0003723
Pumo9g01159 851 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 507 568 IPR000504 GO:0003723
Pumo9g01159 851 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 382 IPR000504 GO:0003723
Pumo9g01159 851 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 627 701 IPR000504 GO:0003723
Pumo9g01159 851 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 73 IPR000504 GO:0003723
Pumo9g01159 851 CDD RRM4_RBM19_RRM3_MRD1 505 576 - -
Pumo9g01159 851 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 725 801 IPR000504 GO:0003723
Pumo9g01159 851 FunFam Multiple RNA-binding domain-containing protein 1 719 825 - -
Pumo9g01159 851 FunFam Multiple RNA-binding domain-containing protein 1 496 598 - -
Pumo9g01159 851 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 625 708 IPR000504 GO:0003723
Pumo9g01159 851 SUPERFAMILY RNA-binding domain, RBD 613 714 IPR035979 GO:0003676
Pumo9g01159 851 SMART rrm1_1 726 797 IPR000504 GO:0003723
Pumo9g01159 851 SMART rrm1_1 506 573 IPR000504 GO:0003723
Pumo9g01159 851 SMART rrm1_1 626 704 IPR000504 GO:0003723
Pumo9g01159 851 SMART rrm1_1 3 76 IPR000504 GO:0003723
Pumo9g01159 851 SMART rrm1_1 311 384 IPR000504 GO:0003723
Pumo9g01159 851 MobiDBLite consensus disorder prediction 405 421 - -
Pumo9g01159 851 CDD RRM6_RBM19_RRM5_MRD1 725 799 - -
Pumo9g01159 851 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 391 701 - -
Pumo9g01159 851 SUPERFAMILY RNA-binding domain, RBD 502 592 IPR035979 GO:0003676
Pumo9g01159 851 CDD RRM1_MRD1 2 78 - -
Pumo9g01159 851 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 80 IPR000504 GO:0003723
Pumo9g01159 851 MobiDBLite consensus disorder prediction 393 421 - -
Pumo9g01159 851 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 388 IPR000504 GO:0003723
Pumo9g01159 851 SUPERFAMILY RNA-binding domain, RBD 721 803 IPR035979 GO:0003676
Pumo9g01159 851 SMART rrm2_1 311 384 IPR003954 GO:0003676
Pumo9g01159 851 SMART rrm2_1 626 706 IPR003954 GO:0003676
Pumo9g01159 851 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 505 577 IPR000504 GO:0003723
Pumo9g01159 851 MobiDBLite consensus disorder prediction 242 281 - -
Pumo9g01159 851 FunFam - 280 427 - -
Pumo9g01159 851 FunFam Nucleotide/nucleic acid binding protein 621 716 - -
Pumo9g01159 851 CDD RRM5_RBM19_like 626 704 IPR034423 -
Pumo9g01159 851 MobiDBLite consensus disorder prediction 182 302 - -
Pumo9g01159 851 Gene3D - 1 127 IPR012677 -
Pumo9g01159 851 Gene3D - 599 716 IPR012677 -
Pumo9g01159 851 Gene3D - 212 397 IPR012677 -
Pumo9g01159 851 MobiDBLite consensus disorder prediction 85 127 - -
Pumo9g01159 851 SUPERFAMILY RNA-binding domain, RBD 300 394 IPR035979 GO:0003676
Pumo9g01159 851 MobiDBLite consensus disorder prediction 192 223 - -
Pumo9g01159 851 SUPERFAMILY RNA-binding domain, RBD 3 83 IPR035979 GO:0003676
Pumo9g01159 851 Gene3D - 717 826 IPR012677 -
Pumo9g01159 851 Gene3D - 498 598 IPR012677 -
Pumo9g01159 851 MobiDBLite consensus disorder prediction 224 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01159 Pumo-Chr9 34874634 34885210 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01159 618 817 Eukaryotic Initiation Factors Gene Family AT1G49760 29.577 1.23e-11 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01159 K14787 - gmx:100798742 1471.83