Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01157 ATGTTGAATACGAAGGCGTTCCAAGGCGCGAACGTGTTCATGTCGCGAAACCTCGTGCCGCCGGAAGTCTTCGACAAGCTACACGACGCCGTCAAAGATAACGGCGCCCAAATCCACCTCTGCTGCGACCCTTCCCGTAACGGCCCCAACGATTACCACATCATTTCTTCAAGGAAACACGAAAAGTTCGATGATCTTAAAGCCAAGGGCTGCAAATTGCTCGGTCCTATATGTGTTCTTTCGTGTGCCAAAGGAGGCAGGCCTCTGCCTAAACAAGGCTTCACTTGTTGCCTTGCCATGGACGGTGTCAAAGTACTTGCATCTGGCTTTGACACGGATGAGAAGGTTAAGATAGAAGAGTTAGTGGCTGAAATGGGGGGAGTTCTACACACTAAAGCATCATTGGATTTGAACTTTGTCGTTGTGAAAAATGTTTTAGCTGCAAAGTACAAGTGGGCTTTGAATATATTGAAGAAACCAATAGTCACTTATGAATGGTTAAAACAATGCTCAGATGAGCATCGTGTTGTTCCTCAAGAGTCATACAAGGTCCTTCCTTTCTCTGGGTTAAAGATTTGTGTTACTGGAATCCCAGCAGAAAACCGTAAGGAGATGGAGAAGCTTATTTTACAAAATGGTGGGAAATACTCCGCGGAATTGACAAAGAAATGCACGCATTTGATTTCTGAGGCTCCTGAAGGTGACAAATATAAGGTGGCAAAACGATGGGGCCACATTCATATTGTGACAAGGAAATGGTTTGATCAATCTATTGCTCGAAAAGCATGTCTGAATGAGGAGTTGTTCCCTGTTCAGCATGGATCTGTATCTTCACATAAAGTAACTAGGGACTTAACAATGCAACATAGCCAAGAAAGGGATTTTGGGAAATTGCAATCTGCGGCATCCTCAGGTGCTACAGATTCAAATGTGCAAGTTTTTTCTTGTGCTGAGTTTATGGATAGAGATCTAGAAGCTACACAGTCAGAACACACGTCTTCAGTTTCAAATGTTCCCTTATTTGCTAAGGAGGCAGATGCTGAACCTCCTCCGTTGCAGACCAGCAGTGAATTGAACTTTGATGGTGCTGTTGCTAATGATTCTGAATCTGATGATAATGACCTGTACTTATCAGAGTGCAGAATATTACTAGTTGGTTTTGAAGCCTGTGAAATGCGGAAACTAGTTAATATGGTGCGTAAAGGTGGTGGCTCCCGGTATATGTCTTTTAATGACAAATTGACACACATAGTAATTGGGAATCCTACTGAAATGGAAAAGAAGGATGTGAGGAGTCTTGCTGCTTTAGGTGTAATTTATGTTGTTAAAATTGCATGGCTTGAAGATTGTGACCGTGAAAAGAAACAAGTCCCTGTTCTTAGGAGACACATATATGATCTACTTCATCCAAAAGCAAGCTTGATAAAAGGAGCAGTAACAGGCAGTATGTCTATGGATCACGGTAAAAGCTCCAGCTTTCATCAAAGATCGCATCAGGTGGGCTTTGAAATTGTAAAGCCAGAATCTTTGGAGAAAAGAAAAGAAGAGAAAAAAGATATGGGTATAAATGGTCACTCTTTCAGTAAAGCAATAGGCAGAACTATGCTGCAAAATCAACTTCCGGATAATAAATTGAGCTCACAAAGGATGACCCAACATGACTCCAGTGTTCAATACGTGAAGTCAGCAAATGTTTTCAGAGGGAAACTATTTTGTTTCTCAAATTTATTTCCTGAAGAAAGGAGAGATGAGATTGTTCAATGGATAAGTCAAGGGGGAGGAGAGATAATAAGTGGGCAAACAAAACAGAGTGCCCACTATACTATTGAGTGTCATGGTGTAACACCCATGTTGACTGGTGATTCCAAGAGTTTGTATATTTCCAGTCATTGGATACGATCTTGTTTGGAGGCTGGATCCTTGCTGGATGTTGACAGTCACATTCTTTATTCTCCACTTCCCTGCCGTGTTCCCTTGCCTGGGTTTGAAAGCTTCCGGTTTTGCGTTTCACAGTATGAGGAGAAAGACAGAAATCTCCTAAGAAACTTGTGTTTTGTTCTTGGAGCTAAATTTGGGGACAAGTTGACTAAGAAGGTTACCCATTTGTTGTGTAAATTCACCAATGGGCCAAAGTATGAGGCTGCTTGTAAATGGGGGATTCAATCAATTACATCTGAATGGATATTTGGATGCGTCAAACAGAATGGAGTTGTGGCCATTGATCAGTTTTTACCAAAAGAAGTCACTGCTCAAGACCGAGAGGCGGGAATTTGCACTGTGAGTCAATTTCCTACCCAGGCTGTTCAAATGATAAGTGACATGCCCTCCCAGTTGTCAAGTCAATCACAAACTTTGAGAGGCATGACAAATAAAAATGTCAGTTGTGTAGTTGATAATCACGAGACCAATTTTAAGATACCAAGTAATTATAGCAAAAAGGCAAGGCTTGTGGAGGAACCTTGCCTATCCAATAAGATGCCTTCAGCATCAAATTCAGGTATTCATGCTGATGACAAGAATTTTTCCGAAGACAACATGCTTATAGATGCTGGGGAGGTTTGTCATACTGTTCCTGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGCAGACTAGTAAGATGCATGATCAGAGGTCCCCAGTGCAGACAGGGTGTGAGAGAAGTATTTACCCATCTGATCGCTCAGTCCTTGGTGATGATAATTCCAATCCTCATACTGTCTTTGGATTATCTAAACACTGGTTAAACAGAAGTGGCAGAAAAGATGATATTGGGGAGGCTTCTCAAGACAGAAGAACCGGAATATATGATGGTTTTAGCGAAACACAGACAGAATCTCAGGTTGTTGGTTATGAAGAGGATTTATCAGGAAGGCAAATGCTTATAGATAGAGTCCGAACTCGAAGTAGCTTGCAGTGA 2919 0.418 MLNTKAFQGANVFMSRNLVPPEVFDKLHDAVKDNGAQIHLCCDPSRNGPNDYHIISSRKHEKFDDLKAKGCKLLGPICVLSCAKGGRPLPKQGFTCCLAMDGVKVLASGFDTDEKVKIEELVAEMGGVLHTKASLDLNFVVVKNVLAAKYKWALNILKKPIVTYEWLKQCSDEHRVVPQESYKVLPFSGLKICVTGIPAENRKEMEKLILQNGGKYSAELTKKCTHLISEAPEGDKYKVAKRWGHIHIVTRKWFDQSIARKACLNEELFPVQHGSVSSHKVTRDLTMQHSQERDFGKLQSAASSGATDSNVQVFSCAEFMDRDLEATQSEHTSSVSNVPLFAKEADAEPPPLQTSSELNFDGAVANDSESDDNDLYLSECRILLVGFEACEMRKLVNMVRKGGGSRYMSFNDKLTHIVIGNPTEMEKKDVRSLAALGVIYVVKIAWLEDCDREKKQVPVLRRHIYDLLHPKASLIKGAVTGSMSMDHGKSSSFHQRSHQVGFEIVKPESLEKRKEEKKDMGINGHSFSKAIGRTMLQNQLPDNKLSSQRMTQHDSSVQYVKSANVFRGKLFCFSNLFPEERRDEIVQWISQGGGEIISGQTKQSAHYTIECHGVTPMLTGDSKSLYISSHWIRSCLEAGSLLDVDSHILYSPLPCRVPLPGFESFRFCVSQYEEKDRNLLRNLCFVLGAKFGDKLTKKVTHLLCKFTNGPKYEAACKWGIQSITSEWIFGCVKQNGVVAIDQFLPKEVTAQDREAGICTVSQFPTQAVQMISDMPSQLSSQSQTLRGMTNKNVSCVVDNHETNFKIPSNYSKKARLVEEPCLSNKMPSASNSGIHADDKNFSEDNMLIDAGEVCHTVPDVAAAIEDLLEQTSKMHDQRSPVQTGCERSIYPSDRSVLGDDNSNPHTVFGLSKHWLNRSGRKDDIGEASQDRRTGIYDGFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSLQ 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01157 972 ProSiteProfiles BRCT domain profile. 662 745 IPR001357 -
Pumo9g01157 972 FunFam Transcription coactivator 354 464 - -
Pumo9g01157 972 SUPERFAMILY BRCT domain 57 183 IPR036420 -
Pumo9g01157 972 FunFam Transcription coactivator 97 185 - -
Pumo9g01157 972 Pfam BRCA1 C Terminus (BRCT) domain 101 170 IPR001357 -
Pumo9g01157 972 MobiDBLite consensus disorder prediction 346 371 - -
Pumo9g01157 972 SUPERFAMILY BRCT domain 372 458 IPR036420 -
Pumo9g01157 972 ProSiteProfiles BRCT domain profile. 182 271 IPR001357 -
Pumo9g01157 972 FunFam Transcription coactivator 558 655 - -
Pumo9g01157 972 Pfam BRCT domain, a BRCA1 C-terminus domain 563 646 IPR001357 -
Pumo9g01157 972 CDD BRCT 103 170 - -
Pumo9g01157 972 SUPERFAMILY BRCT domain 627 746 IPR036420 -
Pumo9g01157 972 Gene3D BRCT domain 98 185 IPR036420 -
Pumo9g01157 972 ProSiteProfiles BRCT domain profile. 372 464 IPR001357 -
Pumo9g01157 972 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 8 970 - -
Pumo9g01157 972 CDD BRCT_TopBP1_rpt2_like 186 261 - -
Pumo9g01157 972 Gene3D BRCT domain 186 272 IPR036420 -
Pumo9g01157 972 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Pumo9g01157 972 Gene3D BRCT domain 558 655 IPR036420 -
Pumo9g01157 972 SUPERFAMILY BRCT domain 564 651 IPR036420 -
Pumo9g01157 972 SUPERFAMILY BRCT domain 186 271 IPR036420 -
Pumo9g01157 972 Gene3D BRCT domain 33 94 IPR036420 -
Pumo9g01157 972 Pfam twin BRCT domain 666 727 IPR001357 -
Pumo9g01157 972 Pfam twin BRCT domain 190 253 IPR001357 -
Pumo9g01157 972 SMART BRCT_7 563 639 IPR001357 -
Pumo9g01157 972 SMART BRCT_7 184 261 IPR001357 -
Pumo9g01157 972 SMART BRCT_7 4 86 IPR001357 -
Pumo9g01157 972 SMART BRCT_7 659 735 IPR001357 -
Pumo9g01157 972 SMART BRCT_7 374 454 IPR001357 -
Pumo9g01157 972 SMART BRCT_7 97 174 IPR001357 -
Pumo9g01157 972 CDD BRCT_TopBP1_rpt2_like 660 735 - -
Pumo9g01157 972 FunFam DNA topoisomerase II binding protein 1 187 279 - -
Pumo9g01157 972 Gene3D BRCT domain 657 750 IPR036420 -
Pumo9g01157 972 ProSiteProfiles BRCT domain profile. 561 649 IPR001357 -
Pumo9g01157 972 Gene3D BRCT domain 362 461 IPR036420 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01157 1 971 Core DNA Replication Machinery Family AT1G77320 50.340 0.0 930
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01157 K10728 - gmx:100804966 1743.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01157 9 34830236 34851764 Pumo9g01157 9 34830236 34851764 ECH