Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01151 ATGGGGAGGGGCAAGATTGAGATCAAGAGGATTGAGAACTCAAGCAACAGGCAAGTTACCTACTCAAAGAGAAAGAATGGGATCCTAAAGAAGGCCAAGGAAATCACTGTTCTATGTGATGCTCAAGTTTCTCTTATCATCTTTGCTGCATCTGGAAAGATGCATGACTACATCAGCCCTTCCACCACGTTGATTGACATATTGGAGAGGTACCACAAGACCTCAGGGAAGAGGCTTTGGGACGCCAAGCATGAGAACCTAAACGGCGAAATTGAGAGACTCAAGAAAGAGAATGACAGCATGCAAATTGAGCTCAGGCACTTGAAGGGAGAGGATATCAACTCTCTTAACTACAAGGAGCTGATGGCCTTAGAGGATGCCTTAGAAACTGGTCTCGTCAGTGTCCGCGAGAAACAGATGGATGTATACAGGATGTTCAGGAGAAACGACAAGATCTTGGAGGAGGAGAACAGGGAACTTAATTTTCTCTGGCAACAACGTTTGGCAGTGGAAGGTGCGAGAGAAGTGGACAATGGGTTTGATCAGAGCGTAAGGGATTACAATTCCCATATGCCATTTGCCTTTCGTGTGCAGCCTATGCAGCCAAATCTTCAAGAGAGGATCTAA 627 0.4577 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHDYISPSTTLIDILERYHKTSGKRLWDAKHENLNGEIERLKKENDSMQIELRHLKGEDINSLNYKELMALEDALETGLVSVREKQMDVYRMFRRNDKILEEENRELNFLWQQRLAVEGAREVDNGFDQSVRDYNSHMPFAFRVQPMQPNLQERI 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01151 208 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pumo9g01151 208 Gene3D - 13 102 IPR036879 GO:0003677|GO:0046983
Pumo9g01151 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo9g01151 208 Pfam K-box region 82 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo9g01151 208 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Pumo9g01151 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo9g01151 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo9g01151 208 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo9g01151 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pumo9g01151 208 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pumo9g01151 208 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 188 - -
Pumo9g01151 208 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Pumo9g01151 208 Coils Coil 77 111 - -
Pumo9g01151 208 Coils Coil 208 208 - -
Pumo9g01151 208 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01151 Pumo-Chr9 33479304 33483276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01151 1 143 MADS-box Gene Family AT5G20240 68.531 3.42e-68 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pumo9g01151 K-box 9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01151 K09264 - gmx:100817554 409.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01151 9 33479304 33483276 Pumo9g01151 9 33479304 33483276 ECH
Pumo9g01151 9 33479304 33483276 Pumo10g01290 10 16922520 16925303 PCT