Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01142 ATGATGATGCCTTCTAAACCAGGTTGGCCACTGCTTCGTAAGACAATTGAATCTGACAGGAAATGTTCTGAAAGATCACTGTTTCGCCAGATCTCTGTGGTTCAATGGGCAATGCAGTTACCATCTAGGAATCTTTCATATGCTGCACATCAAGACCATAAAACAAACAAGTGTGACCAAGATAAGGGTCAGTTTTTGGGTCTAGATAGCAAGAGTGGTGCTCTTGTTCCAGTGGATGCTGAAATAGGGACTGCGTCTTCACCCGAACGCAATTTGAGAAGCATTCCTAAGGAATTGGAGGGCCTTCATGAGAAATACTCATCCACTTGCAGATTGTTTGAGTACCAAGAACTTGTATTGGCAACATCAAATTTCTTGCCAGAAAATTTGATTGGGAAAGGAGGAAGTAGTCAGGTTTATAGAGGTTGCCTTCCTGATGGCAAGGAACTTGCTGTTAAGATATTAAAGCCATCTGAAGATGTTTTGAAGGAGTTTGTTCTGGAAATAGAAATTATAACTACTTTGAATCACAAAAACATTATTTCCCTCCTTGGCTTCTGCTTTGAGGATGGCAATCTTCTTTTGGTCTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAACCTCCATGGTAATAAGAAAAATCCACTTGTGTTTGGTTGGGCTGAGAGATATAAGGTGGCAATGGGTGTTGCTGAGGCTTTGGAGTATCTGCATAATAATGAAGGCCAATCTGTGATCCATCGCGATGTAAAATCATCAAATGTTTTGTTATCTGAGGATTTTGAACCCCAGCTTTCTGACTTTGGACTTGCTAAATGGGCATCAACCTCATCATCATATATTATATGCACAGATGTTGCTGGAACCTTTGGGTTTGTACTTTCAATTCCCACATAA 900 0.4033 MMMPSKPGWPLLRKTIESDRKCSERSLFRQISVVQWAMQLPSRNLSYAAHQDHKTNKCDQDKGQFLGLDSKSGALVPVDAEIGTASSPERNLRSIPKELEGLHEKYSSTCRLFEYQELVLATSNFLPENLIGKGGSSQVYRGCLPDGKELAVKILKPSEDVLKEFVLEIEIITTLNHKNIISLLGFCFEDGNLLLVYDFLSRGSLEENLHGNKKNPLVFGWAERYKVAMGVAEALEYLHNNEGQSVIHRDVKSSNVLLSEDFEPQLSDFGLAKWASTSSSYIICTDVAGTFGFVLSIPT 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01142 299 Gene3D Transferase(Phosphotransferase) domain 1 200 294 - -
Pumo9g01142 299 ProSiteProfiles Protein kinase domain profile. 125 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g01142 299 ProSitePatterns Protein kinases ATP-binding region signature. 131 153 IPR017441 GO:0005524
Pumo9g01142 299 PANTHER OS08G0249100 PROTEIN 22 293 IPR046958 -
Pumo9g01142 299 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 94 199 - -
Pumo9g01142 299 Gene3D Phosphorylase Kinase; domain 1 90 199 - -
Pumo9g01142 299 Pfam Protein kinase domain 129 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g01142 299 SUPERFAMILY Protein kinase-like (PK-like) 106 293 IPR011009 -
Pumo9g01142 299 ProSitePatterns Serine/Threonine protein kinases active-site signature. 246 258 IPR008271 GO:0004672|GO:0006468
Pumo9g01142 299 SMART serkin_6 125 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01142 Pumo-Chr9 33356719 33357895 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01142 106 294 Receptor kinase-like Gene Family AT5G56890 42.408 3.43e-46 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Pumo9g01142 Pkinase 2e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01142 - - lja:Lj1g3v0268780.1 500.745