Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01124 ATGGAAACTGAGGATGGAAGTAGCAACGGTGATAACGGTGAAGGGGTTGGGCTGGATTGGAGGTTGGATTCTGAAGATGGAGATAATGGGGGGAGAATTTTAGGTGGAAATGGTGTTGCAGAAGGCGAAGAAGATTGGGGCTTGAAGGATGGAGCTGTAAATAATGGCGTGGCAATTGAAGGTGAAGAAGTTCAGGGTTTGAAGAAGGAAGCTGTAGATAATGGGGTGGCGAATGAAGGTGGAGATGGTGTTGCTGGAGGTGAAGAAGTTCGGGGCTTGAAGCGCAAAGCTGTAAATAATGGGGTGACAATTGAAGGAGGAAATGGTGTTGCTGAAACTGAAAGTAAAGAAGTTTGGGGTTTGAAGAATGGAACTGTAAATACTGGCTTGACAGTTGACGGTGGAAATGGTGTTGCTGAAGGTGAAGAAATTCAGGACTTGAAGAATGTAACTGTAAATACTGGGTTGACAGTTGAAGGTAGAAATGGTGTTGCTGAAGATGAAGAAGTTCAGGACTTGAAAAATGAAACTGTAAATACTGGGTTGACAGTTGAAGGAGGAAATGGTGTTGCTGAAGGTGAAGAAGTTCAGGACTTGAAGAATGAAACTGTAAATAATGGGATGGCAATTGAGGGTGGAAATGGTGTTGCTGAAGGTGAAGTTTGGGCCTTGAAGAATGAAGTTATAAATAATGGGGTGGCAATTGCTGATGGGAATGGTGTTGCTGAAGATGGAGAGGTTTCAGGCTCAAAGAATGAAGTTATCGGGGTGGCAATTGCTAATGGGAATGGTGTTTCTGAATGTGGAGAAGTTTGGGGATCGAAGAATGAAGCTGTAAATAATGAAGTGGTAATTGCTAATGGGAATGGTGTTGCTTACAGTGGAGAAGTTCAGGGCTCAAAGAATGAATCTGTAAATAATGAGGTGGTAATTGCAGATGGGAATGGTGTTACTGAAGGTCAAGAGGATCACTGCTTGAAGAATGGAACTGTAGATAATGTAGTGGCAAATGCAGATGGGTTTGGTGTTGTTGAAGGGAACTCTGGTGCAGTTGGATGTTTTCGAACATATAAGAGGCGCAAGCATGTAAAGTCGAGTTCAGAATTTAAAGTCCAGGAGAACAGCAGAAAACATATGGAAGCTGCAAGTCAACTGTCGGACCAGGGGGTGAAGAAACCATGTGATTTAGCTGTAGGCAACACTTCAAAAGATCATTCACATGACCATTGGGGGAATGTTGTACTAAAGCATTTATATCATTCATTAGGCAATGATAATGGTGGCATGGAGTGGTGTATAAGGGAAGCACTCATGAGCCGTCCTAAAATTAGTTGTGCCCCTACAATGACGGAAGCTTTTAAAATTGACAAGGATGGTCAAGAATGCTCTCCGCAATTAGAGTCTTTGTTTTATAGATTACAGAGTGAAGCTAATGGACATGAAAATGTTGTGCACAATGGATTTTCTAGTGAGTCAAATGGCAGTGGTACAACTGAGAGGTGCCAGCGTGTGTTCCGTGATATCTTAGCCTCTGAGAAGTTCAGTTCATTATGTAAAGTGCTACTTGAAAATTTCCAAGGAATGAAACCTGAAACTGTATTTGACTTTAGTTTGATAAACTCAAGGATGAAAGGGCAAGCTTATGAACAATCACCTACACTTTTCTTATCAGATGTTCAACAGGTTTGGCGAAAGCTTCAAAATACTGGAAATCAGATTGTTGCTATGGCCAGGAGCCTCTCCGACATGTCAAAAGCTTCCTTCTGTGAGCAGGTGGGAATTTCAGCGCAGAACTCCTTTGAAGATGAAAAGCAAGTGCTCTGTAACCTGGAATCCATCTCTCACATGAAACCAGAGCGGACAGTAGAATGTGTTGCATTCAAAGTTGGCACTTGCAGGCATTGTGGAGATAAAGCAGATGGGACAGACTGTTTGGTTTGTGATTCATGTGAGGAGATGTATCATCTGTCTTGTATCGAGCCTGCTGTGAAAGAAATACCCCGCAAAAGCTGGTTCTGTGCCAATTGTACTGCTAATGGAATTGGATGTCGACACGAGAATTGTGTGGTCTGTGAACGGTTGAATGTCCCAAAGACCCTGGACAACATTGTTGGTGAGGAAAACATCCCTACAAATGAGGAAACACTGAATGAATTGGAAGAGAATTCAAATTGTACTTATGATGGGATTCAAGCTTCCACAGATGGGAGAAACTCATCCGACTGCAAAATTTGTAAAATGGTGGTGGATGGTGAAAAAATAAAAATCTGTGGTCACTCTTTTTGCCCCAGTAAATACTACCATGTAAGGTGTTTGTCAAGTAAGCAGCTTAAGTCATATGGTCACTGTTGGTATTGCCCTTCTTGTATATGCCAAGTTTGCGTCACTGACAAAGATGATGATAAGATTGTACTCTGTGATGGCTGTGATCATGCATACCACATCTACTGTATGAAACCTCCGCAAAATTCTATTCCAAAAGGGAAATGGTTCTGCATAAAATGCGATGCAGGGATACAAGCAATACGCCAGGCAAGACAGGCGTACGAGAGTAACAAAGCGAAAGTTGGTCAGAATGATTCAAAGCCGAATGAAGATATTGACAAGAAATGGAACAAAAAGCCAGGACGGGAATCAGACAAAGTTGGAGGAATGATGGACATGCTTATAACTGCAGCAAATACTCTGAATTCTGAAGAGGACATAAATGCAATGCAGATTGACTCAAAGAAAACATTAACATGA 2745 0.4193 METEDGSSNGDNGEGVGLDWRLDSEDGDNGGRILGGNGVAEGEEDWGLKDGAVNNGVAIEGEEVQGLKKEAVDNGVANEGGDGVAGGEEVRGLKRKAVNNGVTIEGGNGVAETESKEVWGLKNGTVNTGLTVDGGNGVAEGEEIQDLKNVTVNTGLTVEGRNGVAEDEEVQDLKNETVNTGLTVEGGNGVAEGEEVQDLKNETVNNGMAIEGGNGVAEGEVWALKNEVINNGVAIADGNGVAEDGEVSGSKNEVIGVAIANGNGVSECGEVWGSKNEAVNNEVVIANGNGVAYSGEVQGSKNESVNNEVVIADGNGVTEGQEDHCLKNGTVDNVVANADGFGVVEGNSGAVGCFRTYKRRKHVKSSSEFKVQENSRKHMEAASQLSDQGVKKPCDLAVGNTSKDHSHDHWGNVVLKHLYHSLGNDNGGMEWCIREALMSRPKISCAPTMTEAFKIDKDGQECSPQLESLFYRLQSEANGHENVVHNGFSSESNGSGTTERCQRVFRDILASEKFSSLCKVLLENFQGMKPETVFDFSLINSRMKGQAYEQSPTLFLSDVQQVWRKLQNTGNQIVAMARSLSDMSKASFCEQVGISAQNSFEDEKQVLCNLESISHMKPERTVECVAFKVGTCRHCGDKADGTDCLVCDSCEEMYHLSCIEPAVKEIPRKSWFCANCTANGIGCRHENCVVCERLNVPKTLDNIVGEENIPTNEETLNELEENSNCTYDGIQASTDGRNSSDCKICKMVVDGEKIKICGHSFCPSKYYHVRCLSSKQLKSYGHCWYCPSCICQVCVTDKDDDKIVLCDGCDHAYHIYCMKPPQNSIPKGKWFCIKCDAGIQAIRQARQAYESNKAKVGQNDSKPNEDIDKKWNKKPGRESDKVGGMMDMLITAANTLNSEEDINAMQIDSKKTLT 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01124 914 MobiDBLite consensus disorder prediction 859 881 - -
Pumo9g01124 914 MobiDBLite consensus disorder prediction 1 47 - -
Pumo9g01124 914 ProSiteProfiles Zinc finger PHD-type profile. 788 838 IPR019787 -
Pumo9g01124 914 ProSiteProfiles Zinc finger PHD-type profile. 629 679 IPR019787 -
Pumo9g01124 914 MobiDBLite consensus disorder prediction 850 884 - -
Pumo9g01124 914 SMART PHD_3 741 790 IPR001965 -
Pumo9g01124 914 SMART PHD_3 631 677 IPR001965 -
Pumo9g01124 914 SMART PHD_3 793 836 IPR001965 -
Pumo9g01124 914 Pfam PHD-finger 790 836 IPR019787 -
Pumo9g01124 914 Pfam PHD-finger 632 678 IPR019787 -
Pumo9g01124 914 Gene3D - 524 680 - -
Pumo9g01124 914 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 732 841 IPR013083 -
Pumo9g01124 914 PANTHER OS02G0192300 PROTEIN 568 728 - -
Pumo9g01124 914 CDD PHD1_KDM5A_like 790 835 - -
Pumo9g01124 914 FunFam PHD finger protein EHD3 isoform A 519 680 - -
Pumo9g01124 914 SUPERFAMILY FYVE/PHD zinc finger 790 840 IPR011011 -
Pumo9g01124 914 ProSitePatterns Zinc finger PHD-type signature. 632 676 IPR019786 -
Pumo9g01124 914 SUPERFAMILY FYVE/PHD zinc finger 623 677 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01124 Pumo-Chr9 33172736 33188204 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01124 790 853 C2H2 Transcription Factor Family AT3G01460 50.000 8.15e-15 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pumo9g01124 PHD 5.7e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01124 - - gmx:100810450 1339.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01124 9 33172736 33188204 Pumo9g01124 9 33172736 33188204 ECH
Pumo9g01124 9 33172736 33188204 Pumo10g01299 10 17048538 17055319 PCT