Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01095 ATGGGTTCTTCCTCGGAAGCCGAAAACGAAGCTCTCCGTGGCGTCGAAGAAGCAGAGGATTCTACTTCCAACAAGAAATGCGGCAAGTTCTACGATGTTTATGGACCCGAAGGCAAGGCTGATGTTGTTTTTAACTCGCCAGAAGATAATTCAGCTCTCAATCTTAATGATGTTCAAGGACTTGTAACTTGGGTGCTTGGTGAAGGATTTATGCCTTCATGGGTTTTTATTAAGAATAAACCTCTTATTCCCAAAGTGGTTATGCTCTATATGCCAGGCCTGGACGCAGCTTTGTTTTTGTCGCAGTCTAAAATGCTTCCCAGATTAAAAAAAATTTGTGGCAAACCAAGGCCACTCCTAGCTCTTAGCTGTGTATCAGATGGTATGCAGACGATAGATGCACTCCTAACATGCAAGATGAAAAGGAAAAGGGACGAAAATAGTTCAATTATGCGGAAATCTGCTGTGACATCTCAACAAGAAGAGGGTTGTCGTGATACAGACAGTCTATCGTTTAAGGAGCTTACAAAAGACATACCTTTCCCTGTTACATACTATACACTAACAGAGAAAGAGCTGGAAGAGAATGGATATTCTGTTAATAAGCCAGGTTTTCTTTCTACTTTGCCCACACCTTCAGGATCTCCTTTTTATGAGATGTTGGCACTTGATTGTGAGATGTGCATAACAAGTGAAGGTTTTGAGCTGACAAGAATTACTCTAGTGGATGTCAAAGGACAGGTTTTGATAGATAAATTGGTTAAACCAACAAATGCCATCATTGATTACAACACAAGATTTAGTGGAATAACGTCTGAGATGTTAGATGGCGTGACAACAAGTCTGAGAGACATTCAGGAAGAGTTCCTAAAGTTGGTTTACAAGGAGACTATCCTTGTAGGGCATTCTCTGGAAAACGATTTATTAGCATTGAAGATATCTCATGACTCAGTCATTGACACAGCAGTTTTATACAAACACCCCCGAGGATCATCTCATAAAAATGCTCTACGGTTTCTTACTAAGAGATTTCTTTCAAGGGAGATACAGCAATCAGGGAATGGACATGACAGCATTGAAGATGCTAGAGCTACCATGGATTTGGCACTATTGAAGATCAGAAATGGGCCTGATTTTGGTTCCCCCCCATCCTTTACACGGAAAAAGCTCCTTTCTATTCTGAGTGAGTCTGGCAAAACTTCTTCACTGATTGATGATATATCTGTAGTAAAACGGTATGCCTCAGAGTCCTCTAATGCAATTCCAGTGACCTCTGATGATGTAGCACTTGCAAAGACCAACAAGGAGGTGAAGAATGAAAAGGTACATTTTATCTGGACTCAGTTTTCGGAGCTACACTCATACTTGAAGAAACAAGCTGAAGATTCTGAGAGCTTGAATAAAAGACTTGCAGAGATGATGGCATTACAAACATGTCAGAATAATTTGGCAAAAGGGAAAGGCTTCAAGTTGAAAGCATCTGCTGAACTGAAGGAAATTCTGGCTCGCATGGATGCTAGAATTCATAATCTTTATTTGTCATTACCCACAAATGCTATGATGATAATTTGCACTGGTCATGGAGACACTGCTATTGTCCGCAGGCTGAGGAAAATGCTTACGGAGCAGAATGAAAGTAATTTATGTCGTGAAAAGATTCTGGAAATATTGGCAGAGGTTCAGGCCCGAGCTGAAGTAGCCTTGTGTTTTGTAGGTGTAAAACATTAA 1728 0.4057 MGSSSEAENEALRGVEEAEDSTSNKKCGKFYDVYGPEGKADVVFNSPEDNSALNLNDVQGLVTWVLGEGFMPSWVFIKNKPLIPKVVMLYMPGLDAALFLSQSKMLPRLKKICGKPRPLLALSCVSDGMQTIDALLTCKMKRKRDENSSIMRKSAVTSQQEEGCRDTDSLSFKELTKDIPFPVTYYTLTEKELEENGYSVNKPGFLSTLPTPSGSPFYEMLALDCEMCITSEGFELTRITLVDVKGQVLIDKLVKPTNAIIDYNTRFSGITSEMLDGVTTSLRDIQEEFLKLVYKETILVGHSLENDLLALKISHDSVIDTAVLYKHPRGSSHKNALRFLTKRFLSREIQQSGNGHDSIEDARATMDLALLKIRNGPDFGSPPSFTRKKLLSILSESGKTSSLIDDISVVKRYASESSNAIPVTSDDVALAKTNKEVKNEKVHFIWTQFSELHSYLKKQAEDSESLNKRLAEMMALQTCQNNLAKGKGFKLKASAELKEILARMDARIHNLYLSLPTNAMMIICTGHGDTAIVRRLRKMLTEQNESNLCREKILEILAEVQARAEVALCFVGVKH 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01095 575 CDD REX1_like 221 370 IPR034922 -
Pumo9g01095 575 Gene3D - 218 378 IPR036397 GO:0003676
Pumo9g01095 575 SMART exoiiiendus 219 378 IPR013520 -
Pumo9g01095 575 Pfam Exonuclease 222 368 IPR013520 -
Pumo9g01095 575 FunFam RNA exonuclease NEF-sp 217 380 - -
Pumo9g01095 575 SUPERFAMILY Ribonuclease H-like 220 373 IPR012337 -
Pumo9g01095 575 Coils Coil 456 476 - -
Pumo9g01095 575 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 30 394 IPR047021 GO:0004527
Pumo9g01095 575 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01095 Pumo-Chr9 30354519 30365632 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01095 202 368 C2H2 Transcription Factor Family AT2G48100 28.962 1.58e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01095 K14570 - gmx:100802793 1061.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01095 9 30354519 30365632 Pumo9g01095 9 30354519 30365632 ECH