Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01086 ATGTCTAGGACACTGGTGCAGCCGATAGGGCAGAAGAGGCTAACAAATGTGGCAGTGGTGCGTCTGAAGAAGCATGGCATGCGCTTCGAAATCGCCTGCTACCCTAACACTGTCCTCTCTTGGCGTTCCGGCGTGGAAAAGGACCTGGATGAAGTGCTGCAGTCCCACACTGTTTATTCTAATGTTTCCAAAGGGGTTCTCGCCAAGTCCAAGGATTTAATTGCGGCTTTTGGCACCGATGACCAGTCCAAGATTTGCTTAGATATTTTAAAGAAAGGGGAGCTTCAGGTCGCTGGGAAAGAGAGGGAATCATTGTTATCGAGTCAGTTCAGGGATATTGCGACCATAGTGATGCACAAGACTTACAATCCCGAGACTCAGCGCCCTTACACTATCAGTATGATTGAACGCCTCATGCGAGAAATCCATTTCGCTGTTGATCCACACAACACCTCCAAGAAGCAGGCTTTGGAGTTAATTCAAGAGCTTCAAAAGCACTTCCCTATAAAACGGTGTCCATTGAGAATACGTGGTACTGCTCCTGAGGACCAAGTGCCTGAACTTTTAGAAAAGCTGAATGAATGGAATGCCACTGTTATTTCTAAAGAAGGATCTTCTGCTCAGTTATCTGTTATTTTTGAATTGGAACCTGGCCTTTATAAGGATTGTCATGACCTTGTTATGAATAAGATGCATGGAAGATTTGAAGTTCTTGCACACTCTCTTTATGTGGAGGGGGATACCCAAGTGGAGCAATACAATGATTATGGGGATATACCTGCACTGTTGCCCAAAGAAACTCGTGATTCTGTGCTTGAACTAAATGAGAAACTTCAAAAGCAAACGATTTCATCTACGAGTAGGCCTACTGAGGGACAACAAAAGCAAAACAAGTGCAGCACATGTAATGTTTCTTTTGATGACTCTAAGCTGTACAGGGAACATCACAAGAGTGAATGGCACAAGCACAATATCAAGCGTAAAACAAGGCAACTCCCACCACTTACTGAGGAAGAGTGCATGGCAGACATGGAATTGGGTGACTCAAAATCTGATTTGAAGGATTATTCTTTTTAA 1077 0.4392 MSRTLVQPIGQKRLTNVAVVRLKKHGMRFEIACYPNTVLSWRSGVEKDLDEVLQSHTVYSNVSKGVLAKSKDLIAAFGTDDQSKICLDILKKGELQVAGKERESLLSSQFRDIATIVMHKTYNPETQRPYTISMIERLMREIHFAVDPHNTSKKQALELIQELQKHFPIKRCPLRIRGTAPEDQVPELLEKLNEWNATVISKEGSSAQLSVIFELEPGLYKDCHDLVMNKMHGRFEVLAHSLYVEGDTQVEQYNDYGDIPALLPKETRDSVLELNEKLQKQTISSTSRPTEGQQKQNKCSTCNVSFDDSKLYREHHKSEWHKHNIKRKTRQLPPLTEEECMADMELGDSKSDLKDYSF 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01086 358 NCBIfam ribosome assembly factor SBDS 13 233 IPR002140 GO:0042256
Pumo9g01086 358 Pfam SBDS protein, C-terminal domain 179 238 IPR046928 -
Pumo9g01086 358 Gene3D Classic Zinc Finger 288 347 - -
Pumo9g01086 358 ProSitePatterns Zinc finger C2H2 type domain signature. 299 321 IPR013087 -
Pumo9g01086 358 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 247 IPR039100 -
Pumo9g01086 358 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Pumo9g01086 358 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Pumo9g01086 358 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Pumo9g01086 358 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Pumo9g01086 358 Gene3D - 1 96 IPR036786 -
Pumo9g01086 358 Gene3D - 174 251 - -
Pumo9g01086 358 FunFam SBDS, ribosome maturation factor 100 172 - -
Pumo9g01086 358 Gene3D - 100 172 IPR037188 -
Pumo9g01086 358 FunFam SBDS, ribosome maturation factor 3 96 - -
Pumo9g01086 358 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Pumo9g01086 358 SUPERFAMILY beta-beta-alpha zinc fingers 290 344 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01086 Pumo-Chr9 30033528 30038271 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01086 27 358 C2H2 Transcription Factor Family AT1G43860 60.000 3.32e-146 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo9g01086 SBDS_C 3.4e-26 CL0437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01086 K14574 - gmx:100797497 693.73