Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01085 ATGGGTTCTTCCTCGGAAGCCGAAAACGAAGCTCTCCGTGGCGTCGAAGAAGCAGAGGATTCTACTTCCAACAAGAAATGCGGCAAGTTCTACGATGTTTATGGACCCGAAGGCAAGGCTGATGTTGTTTTTAACTCGCCAGACGATAATTCAGCTCTCAATCTTAATGATGTTCAAGGACTTGTAACTTGGGTGCTTGGTGAAGGATTTATGCCGTCATGGGTTTTTATTAAGAATAAACCTCTTATTCCCAAAGTGGTTATGCTCTATATGCCAGGCCTGGACGCAGCTTTGTTTTTGTCGCAGTCTAAAATGCTTCCCAGATTAAAAAAAATTTGTGGCAAACCAAGGCCACTCCTAGCTCTTAGCTGTGTATCAGATGGTATGCAGACGATAGATGCACTCCTAACATGCAAGATGAAAAGGAAAAGGGACGAAAATAGTTCAATTTTGCAGAAATCTGCTGTGACATCTCAACAAGAAGAGGGTTGTCGTGATACAGACAGTCTATCATTTAAGGAGCTTACAAAAGACATACCTTTCCCTGTTACATACTATACACTAACAGAGAAAGAGCTGGAAGAGAATGGATATTCTGTTAATAAGCCAGGTTTTCTTTCTACTTTGCCCGCACCTTCAGGATCTCCTTTTTATGAGATGTTGGCACTTGATTGTGAGATGTGCATAACAAGTGAAGGTTTTGAGCTGACAAGAATTACTCTAGTGGATGTCAAAGGACAGGTTTTGATAGATAAATTGGTTAAACCAACAAATGCCATCATTGATTACAATACAAGATTTAGTGGAATAACGTCTGAGATGTTAGATGGCGTGACAACAAGTCTGAGAGACATTCAGGAAGAGTTTCTAAAGTTGGTTTACAAGGAGACTATCCTTGTTGGGCATTCTCTGGAAAATGATTTGTTAGCATTGAAGATATCTCATGACTCGGTCATTGACACAGCAGTTTTATACAAACACCCCCGAGGATCATCTCATAAAAATGCTCTACGGTTTCTTACTAAGAGATTTCTTTCAAGGGAGATACAGCAATCAGGGAATGGACATGACAGCATTGAAGATGCTAGAGCTACCATGGATTTGGCACTATTGAAGATCAGAAATGGGCCTGATTTTGGTTCCCCCCCATCCTTTACACGGAAAAAGCTCCTTTCTATTCTGAGTGAGTCTGGCAAAACTTCTTCACTGATTGATGATATATCTGTAGTAAAACGGTATGCCTCAGAGTCCTCTAATGCAATTCCAGTGACCTCTGATGATGTAGCACTTGCAAAGACCAACAAGGAGGTGAAGAATGAAAAGGTACATTTTATCTGGACTCAGTTTTCGGAGCTGCACTCATACTTGAAGAAACAAGCTGAAGATTCTGAGAGCTTGAATAAAAGACTTGCAGAGATGATGGCATTACAAACATGTCAGAATAATTTGGCAAAAGGGAAAGGCTTCAAGTTGAAAGCATCTGCTGAACTGAAGGAAATTCTGGCTCGCATGGATGCTAGAATTCATAATCTTTATTTGTCATTACCCACAAATGCTATGATGATAATTTGCACTGGTCATGGAGACACTGCTATTGTCCGCAGGCTGAGGAAAATGCTTACGGAGCAGAATGAAAGTAATTTATGTCGTGAAAAGATTCTGGAAATATTGGCAGAGGTTCAGGCCCGAGCTGAAGTAGCCTTGTGTTTTATAGGTGTAAAACATTGA 1728 0.4062 MGSSSEAENEALRGVEEAEDSTSNKKCGKFYDVYGPEGKADVVFNSPDDNSALNLNDVQGLVTWVLGEGFMPSWVFIKNKPLIPKVVMLYMPGLDAALFLSQSKMLPRLKKICGKPRPLLALSCVSDGMQTIDALLTCKMKRKRDENSSILQKSAVTSQQEEGCRDTDSLSFKELTKDIPFPVTYYTLTEKELEENGYSVNKPGFLSTLPAPSGSPFYEMLALDCEMCITSEGFELTRITLVDVKGQVLIDKLVKPTNAIIDYNTRFSGITSEMLDGVTTSLRDIQEEFLKLVYKETILVGHSLENDLLALKISHDSVIDTAVLYKHPRGSSHKNALRFLTKRFLSREIQQSGNGHDSIEDARATMDLALLKIRNGPDFGSPPSFTRKKLLSILSESGKTSSLIDDISVVKRYASESSNAIPVTSDDVALAKTNKEVKNEKVHFIWTQFSELHSYLKKQAEDSESLNKRLAEMMALQTCQNNLAKGKGFKLKASAELKEILARMDARIHNLYLSLPTNAMMIICTGHGDTAIVRRLRKMLTEQNESNLCREKILEILAEVQARAEVALCFIGVKH 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01085 575 CDD REX1_like 221 370 IPR034922 -
Pumo9g01085 575 Gene3D - 218 378 IPR036397 GO:0003676
Pumo9g01085 575 SMART exoiiiendus 219 378 IPR013520 -
Pumo9g01085 575 FunFam RNA exonuclease NEF-sp 217 380 - -
Pumo9g01085 575 SUPERFAMILY Ribonuclease H-like 220 373 IPR012337 -
Pumo9g01085 575 Coils Coil 456 476 - -
Pumo9g01085 575 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 30 394 IPR047021 GO:0004527
Pumo9g01085 575 Pfam Exonuclease 222 368 IPR013520 -
Pumo9g01085 575 MobiDBLite consensus disorder prediction 1 25 - -
Pumo9g01085 575 MobiDBLite consensus disorder prediction 10 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01085 Pumo-Chr9 30012699 30023854 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01085 202 368 C2H2 Transcription Factor Family AT2G48100 28.962 2.19e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01085 K14570 - gmx:100802793 1060.06