Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01080 ATGTCCACTGATGGTATCCAGGTTCATGATGACAATGATGTTGGAATCAATGTTTATGACTACGACGACAATGCTACACAGTGCTGTGAGATCATATGTAGGAACACCTGTTCCTGTGTCGCATATGGTCCAACAAATCACATTAACAATACAGGATGCCAGATATGGGGAAAAGGAACCAAATTCGTTAGAGCTTCTGGGGACATAGCACTGCCAATCTACGTTTCTGTAGCAGTGCTCCAAGAACACCCAGTGGAGCGAAAGAAGATGCTGGAGAAGCTATTACATGATATTGGAGGTAATGCTATGCTTTCAATGGTGTACGGTAAAACCATAAAAAGTAAGAACAGGGGAAAGACAAGCAATGAGGTTGCAATATTCACTTTTGAAACCATCGTTGCTGCCACGGACAGTTTCTCAGCTGCTAATAAGCTAGGAGAGGGTGGTTTTGGTCCAGTTTATAAGGGAACATTAAGTGATCAGCAAGAAGTAGCAATAAAGCGACTTTCTAAAAGTTCAGGACAGGGGGTAATAGAGTTTAAGAATGAAGCCAAACTCATGGCCAAACTCCAGCACACTCATCTTGTAAAGCTTTTAGGGTTCTGCATCCAGAGAGATGAAAGAATACTGGTCTATGAGTACATGCCTAACAAGAGCTTAGACTTCTACCTATTTGATTCATCTAGGAAGAATTTGCTAGACTGGGAAAAACGATTGAACATCATTGGAGGCATTGCTCAAGGACTTCTTTATCTTCACAATTATTCAAGACTAAAGGTGATACATCGGGATCTAAAAGCAAGCAATATATTGCTTGATCACGAGATGAATCCTAAGATATCTGACTTTGGCATGGCTCGAATATTTGGTGTAAGAGCATCAGAAGAAAACACAAACAGAGTTGTTGGTACATATGGATACATGGCTCCAGAGTATGCAATAAATGGTGTTGTGTCCATCAAGACAGATGTATTCAGCTTTGGTATACTGCTACTAGAGATACTTAGTAGCAAGAAGAATAATAGTCGCTATCATTCGGATCGCCCGCTCAACCTCATAGGATACGGGTGGCAGCTCTGGAATGAAGGTAGAGCTTTGGAGTTAATAGACCCACCATTGAATGAATTATGTTCTGAGAATGAAGTTTTGAGATGTATTCATATTGGCCTCTTGTGTGTACAAGATCAAGCAACAGATAGACCTACCATGTTAGATATTGTTTCATTTCTATCAAATGATACAATCCAACTTCCCCAACCAAAGCAACCAGCATTCTTCATCAATGAGGTTGTGGAAGAGTTAGAGCTTCGTTACAGCAGGCAAGAACTTCATTCCTTAAACGACATAACAATTTCTAGTACACATGGAAGATAA 1374 0.4032 MSTDGIQVHDDNDVGINVYDYDDNATQCCEIICRNTCSCVAYGPTNHINNTGCQIWGKGTKFVRASGDIALPIYVSVAVLQEHPVERKKMLEKLLHDIGGNAMLSMVYGKTIKSKNRGKTSNEVAIFTFETIVAATDSFSAANKLGEGGFGPVYKGTLSDQQEVAIKRLSKSSGQGVIEFKNEAKLMAKLQHTHLVKLLGFCIQRDERILVYEYMPNKSLDFYLFDSSRKNLLDWEKRLNIIGGIAQGLLYLHNYSRLKVIHRDLKASNILLDHEMNPKISDFGMARIFGVRASEENTNRVVGTYGYMAPEYAINGVVSIKTDVFSFGILLLEILSSKKNNSRYHSDRPLNLIGYGWQLWNEGRALELIDPPLNELCSENEVLRCIHIGLLCVQDQATDRPTMLDIVSFLSNDTIQLPQPKQPAFFINEVVEELELRYSRQELHSLNDITISSTHGR 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01080 457 SUPERFAMILY Protein kinase-like (PK-like) 122 433 IPR011009 -
Pumo9g01080 457 Gene3D Phosphorylase Kinase; domain 1 112 214 - -
Pumo9g01080 457 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Pumo9g01080 457 Pfam PAN-like domain 24 58 IPR003609 -
Pumo9g01080 457 Pfam Protein tyrosine and serine/threonine kinase 142 410 IPR001245 GO:0004672|GO:0006468
Pumo9g01080 457 Gene3D Transferase(Phosphotransferase) domain 1 215 422 - -
Pumo9g01080 457 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 215 418 - -
Pumo9g01080 457 ProSiteProfiles Protein kinase domain profile. 139 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g01080 457 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 105 214 - -
Pumo9g01080 457 SMART serkin_6 139 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g01080 457 Pfam Domain of unknown function (DUF3403) 412 457 IPR021820 GO:0004674
Pumo9g01080 457 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 103 453 - -
Pumo9g01080 457 CDD STKc_IRAK 145 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01080 Pumo-Chr9 29644873 29647324 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01080 129 425 Receptor kinase-like Gene Family AT4G23230 60.606 5.41e-132 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo9g01080 PK_Tyr_Ser-Thr 1.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01080 - - gmx:100794508 745.732