Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01065 ATGAGGATGGAAGAGGAGAGACATGGCTCGGAATGTTCCAAGACAAGCCCTTCTAAGGAAGAAGGTTGTGATGAAGAAAGTGAGGGCAATGAAGATGAAAGTAATAAGCAAAACAACAATGGAGGAAGCTCAAGCAACAGCACTGTGGAAGAGAACGAGAAGAAGACAACAGTGAGGCCTTATGTTAGATCCAAGTTTCCAAGGCTACGTTGGACACCTGATCTTCATCTTCGCTTTGTTCATGCTGTTCAAAGACTTGGAGGACAAGAGAGAGCAACCCCAAAGTTAGTTCTTCAGTTGATGAATATCAAAGGTTTAAGTATTTCTCATGTCAAGAGTCATTTACAGATGTACAGGAGCAAGAAGGTAGACACAAATCAAGTATTGGCTGATCCTAGGCTTCTTGTAGAAACTGGAGACAGAAATGTTTACAATCTTAGCCAACTTCCCATGCTTCAAGGCTACAATCCAAGCCAAAGTTCAGCATACAGATATGGATATGGGGATGCTTCTCTTGGTATCTATGAACACATGGTGCATAGGCCTTTCATGAATAGGAGTTCATTAGATGAATCTGGAGCTGAATTTTGTGGCAGCAGATTGACTGAGAGGACCCATGGGACCAATAGTAACATCAATTGGAGTCATAACATGTTCCAAGTTGATTCTTCTAGTTTTAATGAACCATCAACAACCAAAGTTCATGAACCAAAACATAAGTTCTTCTCATTTCGTGGCAATGAATCCTCATGCACACAAACCAAAATGAGCCAGGTTGATCTACATCAATCAACTCAACTGCAGCCAAGTGCACAAGAGCTCATGCCTAATAATAAGTTGGCTTCAAATCCAGTGGAACTGAAGACCTTGAAAAGGAAGGCTTCAGATATTGATCTTGATTTGAACCTTTCACTTAAGTTAAATTCAAGAATCAATGCTGAGAACCAAGGAAGCATGGTGGACCATGAAGTTGTTGATAGCAATCTATCACTTTCTTTGTGTTCACAATCCTCCTCCTTTAGCAGCAGCAGGTTGAAAAAATCACAAGATCATTCTAAGGAGCAAAGGGAAATTAGAGCCAGTGCTCTGGATCTGACTATATGA 1104 0.4076 MRMEEERHGSECSKTSPSKEEGCDEESEGNEDESNKQNNNGGSSSNSTVEENEKKTTVRPYVRSKFPRLRWTPDLHLRFVHAVQRLGGQERATPKLVLQLMNIKGLSISHVKSHLQMYRSKKVDTNQVLADPRLLVETGDRNVYNLSQLPMLQGYNPSQSSAYRYGYGDASLGIYEHMVHRPFMNRSSLDESGAEFCGSRLTERTHGTNSNINWSHNMFQVDSSSFNEPSTTKVHEPKHKFFSFRGNESSCTQTKMSQVDLHQSTQLQPSAQELMPNNKLASNPVELKTLKRKASDIDLDLNLSLKLNSRINAENQGSMVDHEVVDSNLSLSLCSQSSSFSSSRLKKSQDHSKEQREIRASALDLTI 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01065 367 Gene3D - 67 123 - -
Pumo9g01065 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 123 IPR017930 -
Pumo9g01065 367 SUPERFAMILY Homeodomain-like 67 121 IPR009057 -
Pumo9g01065 367 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 43 268 IPR046955 GO:0003700
Pumo9g01065 367 Pfam Myb-like DNA-binding domain 69 119 IPR001005 -
Pumo9g01065 367 NCBIfam myb-like DNA-binding domain, SHAQKYF class 67 122 IPR006447 GO:0003677
Pumo9g01065 367 MobiDBLite consensus disorder prediction 1 59 - -
Pumo9g01065 367 MobiDBLite consensus disorder prediction 34 51 - -
Pumo9g01065 367 FunFam Myb family transcription factor 65 123 - -
Pumo9g01065 367 MobiDBLite consensus disorder prediction 1 23 - -
Pumo9g01065 367 MobiDBLite consensus disorder prediction 342 367 - -
Pumo9g01065 367 MobiDBLite consensus disorder prediction 346 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01065 Pumo-Chr9 27516343 27517940 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01065 14 124 G2-like Transcription Factor Family AT2G42660 56.757 7.68e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo9g01065 Myb_DNA-binding 7.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01065 - - gmx:102662997 594.349