Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01057 ATGGAGCATGGAAGCCACTCCTTTGAAGATGACCATGAGGCAAAATCAAGCTCTGATTTAAATCCACAATGTTCCACGAACAATGTTGGTGCTCAAATTGGCTTAGGAGATGCAAATGACACACCTCACAATGTGGCTGTGCATGAAGATGACCACTCCATGCCCATTACAAATTTGGTGAGGATCATGCGGAAGGTGCTTCCACCTCAAGCAAAAGTTGCTGAAGAGGCCAAGGAAGCGATGCAAGTGTGTGTGTCTGAGTTCATAAGCTTCATCACCAACGAGGCCAATGAGAGGTGCCATATGGAGCGTCGCAGGATTGTTAAGGCAGAAGACATACTATGGGCCATGGACTCATTGGGCTTCAACGACTATGTTGGGCCTCTCACTACTTTCATCAAACGCTATCGTCGCAATAATAAGGTTGAAAACTTGGGGCACCTTGGGCGGCAAACCGATGTAGGTTATCCTATGTTGTCACTATTGTCACCACCATTGCCACCACAATGTTCGGTGGCTTGTTATGGGCCCAATTTCCTTACAGGCCCAAGTAAGTCTCAAGACTCAAGGGATGTTTGA 579 0.4698 MEHGSHSFEDDHEAKSSSDLNPQCSTNNVGAQIGLGDANDTPHNVAVHEDDHSMPITNLVRIMRKVLPPQAKVAEEAKEAMQVCVSEFISFITNEANERCHMERRRIVKAEDILWAMDSLGFNDYVGPLTTFIKRYRRNNKVENLGHLGRQTDVGYPMLSLLSPPLPPQCSVACYGPNFLTGPSKSQDSRDV 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01057 192 PRINTS CCAAT-binding transcription factor subunit A signature 100 118 - -
Pumo9g01057 192 PRINTS CCAAT-binding transcription factor subunit A signature 119 137 - -
Pumo9g01057 192 PRINTS CCAAT-binding transcription factor subunit A signature 81 99 - -
Pumo9g01057 192 MobiDBLite consensus disorder prediction 1 17 - -
Pumo9g01057 192 Gene3D Histone, subunit A 43 152 IPR009072 GO:0046982
Pumo9g01057 192 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 53 117 IPR003958 -
Pumo9g01057 192 MobiDBLite consensus disorder prediction 1 43 - -
Pumo9g01057 192 SUPERFAMILY Histone-fold 50 144 IPR009072 GO:0046982
Pumo9g01057 192 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 27 140 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pumo9g01057 192 MobiDBLite consensus disorder prediction 18 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01057 Pumo-Chr9 27240408 27242431 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01057 1 137 CCAAT-HAP3 Transcription Factor Family AT1G21970 47.297 6.31e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pumo9g01057 CBFD_NFYB_HMF 2.3e-21 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01057 K08065 - qlo:115956131 142.124