Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01056 ATGGACATGTGGAAATTAATACCCATCTTTGGAGTCTCTATTCGAAGTGAGCTCTATGTTCTTGTTTGTATTTGTTTAGATTTAAATCCACAATGTTCCACGAACAATGTTGGTGCTCAAATTGGCTTAGGAGATGCAAATGACACACCTCACAATGTGGCTGTGCATGAAGATGACCACTCCATGCCCATTACAAATTTGGTGAGGATCATGCGGAAGGTGCTTCCACCTCAAGCAAAAGTTGCTGAAGAGGCCAAGGAAGCGATGCAAGTGTGTGTGTCTGAGTTCATAAGCTTCATCACCAACGAGGCCAATGAGAGGTGCCATACGGAGCGTCGCAGGATTGTTAAGGCAGAAGACATACTATGGGCCATGGACTCATTGGGCTTCAACGACTATGTTGGGCCTCTCACTACTTTCATCAAACGCTATCGTCACAATAATAAGGTTGAAAACTTGGGGCACCTTGGGCGGCAAACCGATGTAGGTTATCCTATGTTGTCACTATTGTCACCACCATTGCCACCACAACGTTCGGTGGCTCGTTATGGGCCCAATTTCCTTACAGGCCCAATTGCCACCTTCTTTGTCGACTGCGTCACCATTGGGTGTTCGTGGGTTGCGTCATTGTTGATTTTGTGGTCATGCTTGTTGTTGGAGGTTGGTTCTGTTGCCGGCAACGGCCTTGTGGAATACTCGTTGACGAAAAGAATGTTGGGGGATGAAGGAGTGTTCCGCGGTGGCAGTCGGCAGTGA 756 0.4749 MDMWKLIPIFGVSIRSELYVLVCICLDLNPQCSTNNVGAQIGLGDANDTPHNVAVHEDDHSMPITNLVRIMRKVLPPQAKVAEEAKEAMQVCVSEFISFITNEANERCHTERRRIVKAEDILWAMDSLGFNDYVGPLTTFIKRYRHNNKVENLGHLGRQTDVGYPMLSLLSPPLPPQRSVARYGPNFLTGPIATFFVDCVTIGCSWVASLLILWSCLLLEVGSVAGNGLVEYSLTKRMLGDEGVFRGGSRQ 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01056 251 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 61 125 IPR003958 -
Pumo9g01056 251 SUPERFAMILY Histone-fold 58 152 IPR009072 GO:0046982
Pumo9g01056 251 Gene3D Histone, subunit A 51 160 IPR009072 GO:0046982
Pumo9g01056 251 PRINTS CCAAT-binding transcription factor subunit A signature 108 126 - -
Pumo9g01056 251 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Pumo9g01056 251 PRINTS CCAAT-binding transcription factor subunit A signature 127 145 - -
Pumo9g01056 251 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 48 148 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01056 Pumo-Chr9 27165267 27168826 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01056 29 145 CCAAT-HAP3 Transcription Factor Family AT1G21970 54.472 5.57e-38 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pumo9g01056 CBFD_NFYB_HMF 1.9e-21 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01056 K08065 - qlo:115956131 141.739