Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01052 ATGTCAAGCAATGCATTAACTCTTTTTATCTTGTTTCTCAACATCTCCTTGTTTCCAGCCACCTCTGCTCTGAACCAGGAAGGTCTCTCTCTACTTTCATGGCTCTCAAAATTCAATTCCTCTGATTCTGCTACTGCTTTTTCATCATGGGATCCAACCCACCAAAGTCCATGCACATGGGACTACATAAAGTGTTCCAAAGAAGGGTTTGTCTCAGAGATCATAATAGAGTCCATTGATCTTCACACCACCTTCCCCACACAGCTTCTTTCTTTTGGCAACCTTACCACTGTAGTCATCTCAAATGCAAACCTCACTGGTGAGATTCCCAGTTCAGTGGGAAACTTGTCATCACTGGTTACTTTGGACCTCAGCTTCAATGCTTTATCAGGAACCATTCCATCTGAAATAGGGAAGTTGTACAAACTTCAGTGGTTGTATTTGAATTCAAATTCCTTGCAAGGTGGAATTCCATCCCAGATTGGAAACTGTTCAAAGCTGAGGCATCTGGAACTGTTTGATAACCAGCTCTCTGGCTTGATTCCTGGGGAAATAGGCCAGCTGAGGGATCTTGAAACACTTCGAGCCGGCGGGAACCCGGGTATTCATGGTGAAATTCCAATGCAGATATCAAACTGCAAGGCTCTAGTTTATCTTGGCCTTGCAGATACTGGGATATCAGGGGAGATTCCACCAAGTATAGGAGAACTTACAAGTCTCAAGACACTTCAAATCTACACTGCACACCTCACAGGTAACATCCCACCAGAGATTCAGAACTGCTCAGCCTTGGAGGAGTTGTTTCTTTATGAAAACCAGCTTTCTGGAAACATTCCTTCTGAATTGGGTTCCATGAAAAGCCTCAGAAAGGTGTTGCTGTGGCAGAATAATTTCACTGGAACAATTCCAGAAAGTTTGGGAAACTGTACAAGCCTGAGAGTTATAGATTTTTCTATGAATTCTTTGGTTGGTGAACTTCCTGTGACTCTCAGTAGCCTAATCTTATTGGAGGAGCTTCTTTTGTCTAATAATAACATTTCTGGAGAGATAGCTTCCTATATTGGCAACTTCACCAGTCTGAAGCAACTGGAATTGGATAATAATAGATTCTCTGGGGAGATTCCACCAGTCTTGGGGCAACTGAAGGAACTAACCTTGTTCTATGCCTGGCAGAATCAGCTCCATGGAAGCATACCAACAGAACTCTCCAACTGTGAGAAACTTCAAGCACTTGATCTTTCACATAATTTCCTCTCTGGGTCCATTCCAAGTTCACTATTTCATCTAGAGAATTTAACTCAGTTATTGTTGTTATCAAATAGCCTTTCAGGTCAAATTCCTCCAGATATTGGCAGTTGCACCAGGTTGGTCAGGCTAAGGTTGGGATCAAACAACTTCACTGGTCAAATTCCACCAGAAATAGGCTTTTTAAGAAGTTTGACCTTTCTTGAATTGTCAGATAATTTGCTCAGTGGAGATATACCCTTTGAGATAGGTAACTGTGCTAAGCTAGAGATGCTTGACTTTCACAGCAATGAGTTGCAAGGAGCAATTCCTTCCTCATTAGAATTCTTAGTTAGTCTTAATGTCTTGGATCTTTCTTTAAACAGAATAACCGGCAGCATCCCTGAAAATTTAGGCAAGCTAGCATCTCTAAATAAGTTGATACTCAGTGGAAACCAAATCACTGATTTGATCCCTCAGTCACTTGGCTTCTGTAAGGCTTTGCAGTTGCTTGACATAAGCAACAATAGGATCAGTGGTTCCATTCCTGATGAGATTGGTCACTTGCAAGAACTAGATATCCTCTTGAACTTGAGTTGGAATTCTTTATCTGGCCCCATCCCAGAGACCTTCTCAAATCTCTCAAAACTTTCCAACTTGGACATCTCTCACAACAAGCTCACAGGGAGTCTCAGAATACTGGGTAGTCTTGACAATCTAGTTTCTCTTAATGTCTCCTACAATAGTTTTTCTGGTTCTCTTCCTGATACAAAATTCTTCAGGGATCTCCCTCCTGCTGCATTTGCTGGCAACCCTGACCTATGTATTACCAAGTGTCCAGTAAGTGGACATCACCATGGCATCAAGTCAATAAGAAACATTATCATCTACACTTTCCTTGGTGTTATTTTCACTTCAGGGTTTGTTACTTTTGGAGTAATCTTAGCTCTCAAAATTCAAGGGGGGGCTAATTTTGACAGTGAAATGCAATGGGCTTTCACTCCATTTCAAAAACTCAACTTCTCCATCAATGACATCATCCCAAAGTTATCAGATTCAAACATTGTGGGAAAGGGTTGCTCGGGAGTCGTGTACCGTGTGGAGACTCCAATGAACCAGGTTGTTGCAGTGAAGAAGCTGTGGCCACCAAAGCATGATGAGACACCAGAGAGAGACCTTTTTGCTGCAGAAGTTCACACCCTTGGATCAATAAGGCATAAAAACATAGTGAGACTTTTAGGATGCTACAACAATGGAAGAACTAGATTGCTCTTGTTTGATTACATATGCAATGGGAGTTTGTCTAGATTGCTTCATGAAAATAGTTTGTTCTTGGACTGGGATGCAAGATATAAGATCATTCTGGGAGCAGCTCATGGATTAGAATATCTTCATCATGATTGTATCCCTCCAATCATTCATAGAGACATTAAGGCTAACAACATCTTGGTAGGTCCACAATTTGAAGCTTTTCTTGCAGATTTTGGCCTTGCAAAACTTGTTGGTTCCTCAGATTATTCCGGAGCTTCTGCAATAATTGCAGGTTCTTATGGATACATAGCTCCTGAATATGGATACAGTCTAAGGATCACAGAGAAGAGTGATGTGTACAGTTTTGGTGTGGTGCTCATTGAGGTCTTAACAGGGATGGAGCCAATAGATAACAGGATTCCAGAAGGTTCCCACATAGTCCCTTGGGTTAGCAGGGAAATCAGAGAGAAGAAAAGGGAATTTGCATCAATTCTGGACCAGAAACTAGCACTGCAGTGTGGAACACAAATCCCTGAGATGCTTCAAGTGCTAGGGGTGGCTCTCCTCTGTGTGAATCCATCCCCAGAAGAAAGACCTACAATGAAAGATGTAACAGCAATGCTCAAGGAGATCAGACATGAAAATGTGGATTTTGATTTTGAGAAGTCAAATCTTCTACACAAAGGAGTTGTCACCAATCCAAAAGCTGCAGTTCAGTGTCCAAGCTTCTCCAGATCTTGTAAACCTCTAACTGAATCACCATCTTCTTCAGTGTCACCACATTAA 3261 0.417 MSSNALTLFILFLNISLFPATSALNQEGLSLLSWLSKFNSSDSATAFSSWDPTHQSPCTWDYIKCSKEGFVSEIIIESIDLHTTFPTQLLSFGNLTTVVISNANLTGEIPSSVGNLSSLVTLDLSFNALSGTIPSEIGKLYKLQWLYLNSNSLQGGIPSQIGNCSKLRHLELFDNQLSGLIPGEIGQLRDLETLRAGGNPGIHGEIPMQISNCKALVYLGLADTGISGEIPPSIGELTSLKTLQIYTAHLTGNIPPEIQNCSALEELFLYENQLSGNIPSELGSMKSLRKVLLWQNNFTGTIPESLGNCTSLRVIDFSMNSLVGELPVTLSSLILLEELLLSNNNISGEIASYIGNFTSLKQLELDNNRFSGEIPPVLGQLKELTLFYAWQNQLHGSIPTELSNCEKLQALDLSHNFLSGSIPSSLFHLENLTQLLLLSNSLSGQIPPDIGSCTRLVRLRLGSNNFTGQIPPEIGFLRSLTFLELSDNLLSGDIPFEIGNCAKLEMLDFHSNELQGAIPSSLEFLVSLNVLDLSLNRITGSIPENLGKLASLNKLILSGNQITDLIPQSLGFCKALQLLDISNNRISGSIPDEIGHLQELDILLNLSWNSLSGPIPETFSNLSKLSNLDISHNKLTGSLRILGSLDNLVSLNVSYNSFSGSLPDTKFFRDLPPAAFAGNPDLCITKCPVSGHHHGIKSIRNIIIYTFLGVIFTSGFVTFGVILALKIQGGANFDSEMQWAFTPFQKLNFSINDIIPKLSDSNIVGKGCSGVVYRVETPMNQVVAVKKLWPPKHDETPERDLFAAEVHTLGSIRHKNIVRLLGCYNNGRTRLLLFDYICNGSLSRLLHENSLFLDWDARYKIILGAAHGLEYLHHDCIPPIIHRDIKANNILVGPQFEAFLADFGLAKLVGSSDYSGASAIIAGSYGYIAPEYGYSLRITEKSDVYSFGVVLIEVLTGMEPIDNRIPEGSHIVPWVSREIREKKREFASILDQKLALQCGTQIPEMLQVLGVALLCVNPSPEERPTMKDVTAMLKEIRHENVDFDFEKSNLLHKGVVTNPKAAVQCPSFSRSCKPLTESPSSSVSPH 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01052 1086 ProSiteProfiles Protein kinase domain profile. 758 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g01052 1086 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 24 199 - -
Pumo9g01052 1086 Gene3D Transferase(Phosphotransferase) domain 1 837 1053 - -
Pumo9g01052 1086 SMART LRR_typ_2 477 501 IPR003591 -
Pumo9g01052 1086 SMART LRR_typ_2 573 597 IPR003591 -
Pumo9g01052 1086 SMART LRR_typ_2 525 548 IPR003591 -
Pumo9g01052 1086 SMART LRR_typ_2 285 309 IPR003591 -
Pumo9g01052 1086 SMART LRR_typ_2 357 381 IPR003591 -
Pumo9g01052 1086 SMART LRR_typ_2 645 678 IPR003591 -
Pumo9g01052 1086 SMART LRR_typ_2 622 644 IPR003591 -
Pumo9g01052 1086 SMART LRR_typ_2 429 453 IPR003591 -
Pumo9g01052 1086 SMART LRR_typ_2 116 139 IPR003591 -
Pumo9g01052 1086 SMART LRR_typ_2 549 572 IPR003591 -
Pumo9g01052 1086 SMART LRR_typ_2 140 164 IPR003591 -
Pumo9g01052 1086 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 407 691 - -
Pumo9g01052 1086 SMART serkin_6 758 1033 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g01052 1086 SUPERFAMILY L domain-like 561 683 - -
Pumo9g01052 1086 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 837 1050 - -
Pumo9g01052 1086 Gene3D Phosphorylase Kinase; domain 1 735 836 - -
Pumo9g01052 1086 Gene3D Ribonuclease Inhibitor 262 428 IPR032675 -
Pumo9g01052 1086 PRINTS Leucine-rich repeat signature 408 421 - -
Pumo9g01052 1086 PRINTS Leucine-rich repeat signature 622 635 - -
Pumo9g01052 1086 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Pumo9g01052 1086 SUPERFAMILY Protein kinase-like (PK-like) 741 1033 IPR011009 -
Pumo9g01052 1086 Gene3D Ribonuclease Inhibitor 190 261 IPR032675 -
Pumo9g01052 1086 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 378 1034 - -
Pumo9g01052 1086 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 734 836 - -
Pumo9g01052 1086 ProSitePatterns Serine/Threonine protein kinases active-site signature. 880 892 IPR008271 GO:0004672|GO:0006468
Pumo9g01052 1086 Pfam Leucine Rich Repeat 407 429 IPR001611 GO:0005515
Pumo9g01052 1086 Pfam Leucine Rich Repeat 597 622 IPR001611 GO:0005515
Pumo9g01052 1086 Gene3D Ribonuclease Inhibitor 24 184 IPR032675 -
Pumo9g01052 1086 ProSiteProfiles Leucine-rich repeat profile. 407 429 IPR001611 GO:0005515
Pumo9g01052 1086 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 200 325 - -
Pumo9g01052 1086 Pfam Protein kinase domain 761 1030 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g01052 1086 ProSitePatterns Protein kinases ATP-binding region signature. 764 787 IPR017441 GO:0005524
Pumo9g01052 1086 Gene3D Ribonuclease Inhibitor 429 694 IPR032675 -
Pumo9g01052 1086 Pfam Leucine rich repeat 503 562 IPR001611 GO:0005515
Pumo9g01052 1086 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515
Pumo9g01052 1086 SUPERFAMILY RNI-like 82 395 - -
Pumo9g01052 1086 SUPERFAMILY L domain-like 276 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01052 Pumo-Chr9 27061402 27065454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01052 23 1072 Receptor kinase-like Gene Family AT5G56040 47.437 0.0 942
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pumo9g01052 Pkinase 2.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01052 - - gmx:100814382 2015.74