Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01041 ATGGATCAAATTAACAGCAGCAACAACATCCTATGCAAATACACCGAACACCAAACTGTCATGAAAAAATACACAAAGCCCAAAAACAACAACACTTCCCGTTCGCCTAAAGTGATTTCCATATCCGTAACCGATCCATACGCCACAGACTCATCCAGCGACGAAGAAAAAGTCACGCGCCGCCAGCGCGTGAAGCGCTACGTCAACAGAATCGAACTCCAGCCAGCGTTTAAAGCCGTCGCTACCAAAAAGAGGCACGCCGGAGATGCCACTGCTTTGCGGCGACCGCCGGCGAAGCTGATAAATTCCGGCAACGGGAAAAAATTCCGCGGCGTCCGGCAACGGCCGTGGGGAAAATGGGCGGCGGAGATACGAGATCCCAAGCGGAGCGTGAGAATCTGGCTCGGAACCTTCGACACCGCCGAGGAAGCCGCCATGTGTTACGACAATGCCGCGATTAGGCTCCGCGGCTCCAAGGCCTTGACGAACTTCCTCACGCCGCCGGCGGAGGAACCGTCGGAAAATGAAGAGGTTGTTGCAAAGGAAGTAGTCACCGCGGCAAAACTGAAAATGAACGTGATCGTGAAGAAGTCGGAAACCCAAGCTTCGGTCTCTGGTTACGATTCGAGCGACGATTGTTGTCTCAACCTTTCTTCGCCCACTTCGGTTCTCCGGTTCAGCGCTGAATCGGAGAAATCGGACGAGCCGTTTGCCGGTCGAACCGACGCGGCGGCGGTGGAAGAGTGTCAAGGCGAGACGGTGTCGTTTCACGAAAGCGGCGAGTTTTTGCTACAGGACATGCCGTGGGATGATGTGTTCAATTTTCCGGTTATGTTTGACGAGCCGGTTTCGCACTTGTTTGACGAAACGACGCCGTTTTCGGTTAGTGACGGTTTCGGTGAGGAAAAGTGGATGCCGTCATCAACGTTGTGCCAAGTGGACGATTATTTCCAAGACATTTTGTTAGGCTCAGATCCTCTGGTGGCTCTGTGA 993 0.5347 MDQINSSNNILCKYTEHQTVMKKYTKPKNNNTSRSPKVISISVTDPYATDSSSDEEKVTRRQRVKRYVNRIELQPAFKAVATKKRHAGDATALRRPPAKLINSGNGKKFRGVRQRPWGKWAAEIRDPKRSVRIWLGTFDTAEEAAMCYDNAAIRLRGSKALTNFLTPPAEEPSENEEVVAKEVVTAAKLKMNVIVKKSETQASVSGYDSSDDCCLNLSSPTSVLRFSAESEKSDEPFAGRTDAAAVEECQGETVSFHESGEFLLQDMPWDDVFNFPVMFDEPVSHLFDETTPFSVSDGFGEEKWMPSSTLCQVDDYFQDILLGSDPLVAL 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01041 330 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 35 241 - -
Pumo9g01041 330 CDD AP2 107 164 IPR001471 GO:0003700|GO:0006355
Pumo9g01041 330 SMART rav1_2 108 171 IPR001471 GO:0003700|GO:0006355
Pumo9g01041 330 SUPERFAMILY DNA-binding domain 108 165 IPR016177 GO:0003677
Pumo9g01041 330 Gene3D AP2/ERF domain 107 166 IPR036955 GO:0003700|GO:0006355
Pumo9g01041 330 PRINTS Ethylene responsive element binding protein signature 131 147 IPR001471 GO:0003700|GO:0006355
Pumo9g01041 330 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Pumo9g01041 330 Pfam AP2 domain 108 157 IPR001471 GO:0003700|GO:0006355
Pumo9g01041 330 ProSiteProfiles AP2/ERF domain profile. 108 165 IPR001471 GO:0003700|GO:0006355
Pumo9g01041 330 MobiDBLite consensus disorder prediction 23 61 - -
Pumo9g01041 330 MobiDBLite consensus disorder prediction 24 49 - -
Pumo9g01041 330 FunFam Ethylene-responsive transcription factor 2 107 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01041 Pumo-Chr9 26799698 26801429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01041 12 322 AP2-EREBP Transcription Factor Family AT4G27950 39.571 1.10e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo9g01041 AP2 2.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01041 - - gmx:100805277 455.677