Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01031 ATGGAGCCCCAGAAAAGTCCACTAATGGATGAAAGCTTGTGTGATATTTTCCAAGATACTGAGTTTGGGGACACCCACTTTGGTGGAGGGGATCTCTTTTCCATTTTGGAGAGCCTAGAAGACTTGAAAGATTTTCCTCCTCCCATCAACAATGAAGCTGCTATTATTAGCCCAACTTCAAAAGAAAATGAGCAAAACTCAAGATTGGTGTCCCAGAAGGTCTCAATATTATCTTCAAGTGCCCCACAAGATTCTGAAACTGAGCCTGAAATCTCACCCAAAAGCAAGAGACAAAAGCTTAGCCCCACATCGCCAGAGGAACCACAGAAGATGTCTCACATAACCGTGGAGCGCAACAGAAGAAAGCAAATGAATGAGAACTTGTCCATCTTGAGGTCTCTTATGCCTTCCTTCTATGTCAAGAGGGGAGACCAAGCATCAATAATCGGAGGTGTGGTTGATTACATCAACGAGTTGCAGCAGCTGCTACAATGCCTAGAGGCCAAGAAACAAAGAAAAGTTTACACTGAAGTCCTAAGCCCTAGGCTAGTTTCAAGCCCAAGGCCTTCACCACTAAGTCCTAGAAAACCACCCTTGAGCCCTAGAATAAACCTCCCCATTAGTCCAAGGACTCCACAACCAAGTAGCCCTTACAAGCCCTGGTTGCAGCCAGCAGGTTACATTTCCCCAACCATAGCCAACTCTCCTACTTCTTCAGCTTCTTCTTCCATCAACGATAATATTAATGAGCTTGTTGCCAATTCAAAGTCCGTTATAGCTGATGTTGAGGTCAAGTTTTCGGGTCCACATGTGCTTCTGAAGACTGTGTCACCACCAATTCCAGGCCAGGCCCTGAGAATAGTATCAGCTCTTGAAGACCTAGCACTTGAAATCCTCCATGTCAACATTAGCACCGCTGAAGAAACCATGCTAAACTCATTCACTATTAAGATAATTATATCTCTTAAAGATGTAAGAGGTTCAATTTTTAGATTGGAATTGAATGCCAACTCAGTGCCGAAGAACTCGCTCAACAAATCCAGCAAACATTCTACTAAAGATATGGCTTCCAGACTTTAG 1080 0.437 MEPQKSPLMDESLCDIFQDTEFGDTHFGGGDLFSILESLEDLKDFPPPINNEAAIISPTSKENEQNSRLVSQKVSILSSSAPQDSETEPEISPKSKRQKLSPTSPEEPQKMSHITVERNRRKQMNENLSILRSLMPSFYVKRGDQASIIGGVVDYINELQQLLQCLEAKKQRKVYTEVLSPRLVSSPRPSPLSPRKPPLSPRINLPISPRTPQPSSPYKPWLQPAGYISPTIANSPTSSASSSINDNINELVANSKSVIADVEVKFSGPHVLLKTVSPPIPGQALRIVSALEDLALEILHVNISTAEETMLNSFTIKIIISLKDVRGSIFRLELNANSVPKNSLNKSSKHSTKDMASRL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01031 359 MobiDBLite consensus disorder prediction 89 103 - -
Pumo9g01031 359 Pfam Helix-loop-helix DNA-binding domain 109 160 IPR011598 GO:0046983
Pumo9g01031 359 CDD bHLH_AtFAMA_like 111 182 - -
Pumo9g01031 359 MobiDBLite consensus disorder prediction 56 88 - -
Pumo9g01031 359 MobiDBLite consensus disorder prediction 187 217 - -
Pumo9g01031 359 PANTHER TRANSCRIPTION FACTOR FAMA 12 321 IPR044283 GO:0003700|GO:0010052
Pumo9g01031 359 MobiDBLite consensus disorder prediction 56 113 - -
Pumo9g01031 359 MobiDBLite consensus disorder prediction 182 217 - -
Pumo9g01031 359 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 107 182 IPR036638 GO:0046983
Pumo9g01031 359 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 108 159 IPR011598 GO:0046983
Pumo9g01031 359 SMART finulus 114 165 IPR011598 GO:0046983
Pumo9g01031 359 FunFam Transcription factor SPEECHLESS 101 174 - -
Pumo9g01031 359 Gene3D - 102 173 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01031 Pumo-Chr9 26535244 26538166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01031 9 318 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 50.138 2.52e-90 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo9g01031 HLH 1.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01031 K20558 - gmx:100809717 491.5