Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00984 ATGAAGAGGAGAGCAATAGCTACCACCATTATTATATTTCTACAAACTTGTGCTGCTTTCCTTATCCACGATTGTCCTGCCTCCTCCTTCGGCAGCATTCCCAACATAAGTTATCCCTTTCGACTCAGCGGTGACCCATCTCACTGCGGCGACAAGAGATACGAATTAGATTGTGAAAACAACGCAACAGTTTTGACTCTGTTTTCAGGGAAATACCACGTACAAGAAATCAATTACAAGAGTTCCAAAATCCGAGTGAGTGATGCGGGTGTTGTGGAGGACGCTACTTGCTCCTTCATGCCTCGCTATTTCTTAGGTTTTGGCAATTTCAGTAACGTCTATATGGGTCCTGGAACGGATCCGCTACATTTGGACCAATTTCAAGCTTCAATAGCATACTTCAACTGTGTCGATGCAATCACTGGTGATCCTAGATATGTTGCTGTGGAGCCCACTGGTTGTGGCTCCAGAGGGCACGTCTATGCTGTTGTTAGAGATCCAAGAAATAATTTTGGTGCCACGGACATCAGGGTTGGGTGCCATCTGAAAGGGGCTACTTTTGCAAATTGGGGAACAGTCCCAGACCACAACCCCAACAAAAACGGTTCCTATGCTGATATTCACCACATGCTTTCACATGGATTTGTGCTCTCTTGGATACGTGTTATTTGTGAAGATCGATGCGGAGTGGGGAAGTATTGCCTTCTTGTCAATGAATCCACTGGTGAAGTCCAATGTGGCGAGCAAGACTGTCGTTACGTCTACTACGCGAACCATTTCATCTACTTGTGTGAACCTACGCTACCAGCAATAACCCGCATACTTTTCGATATTGCGTTATATTGCATTGGCATTTTTAAAGGATTGCTGCAAACGTTTGTCTTGAATAAAGCTACAAAGTATGATGGAATTGAAATTGAAATAGGAAAAAGCATAGGAAGGTATGTTATAATGAGATTTCTATTTGGTGCGGTAGCTTTCATTACTTTGTTGATCTATAAATGGGGAAGAAGACATACATCAAACTACGAAGATATCGAAGGTTTTTTGCAAGGAAACACCTTTATGCCAATAAGGTACTCATACAAAGATATAAAGCACATGACTAGGGGTTTTAAGGAAAAGTTAGGTCAAGGAGGATTCGGCTTGGTATACAAAGGAAAGTTACGTAGTGGGTCATTGGTAGCAATAAAGATGTTAAGTAAATCAAAAGCTAATGGGCAAGAATTCATTAGTGAAGTTGCAACTATAGGAAGAATACACCATAGCAATGTAGTACGACTTATTGGATTTTGTGTTGAGGCATCAAATCGTGCTCTTGTTTATGAATTCATGTCCAATGGCTCTCTTGATAAATATATTTTCTCCAAGCAGAATAATATCTCTTTAACTTATGGGCAAATATATGAAATATCTCTTGGAGTGGCTCGTGGTATTGCTTATTTACATCAAGGTTGTGACATGCAAATTTTACATTTTGACATCAAGCCACATAACATTCTTCTTGATGAGAACTTTATGCCAAAGGTTTCAGACTTTGGCCTAGCGAAGCTTTATCCTATAGATAAAAGCGTTGTCACTTTGACTGCAGCAAGGGGTACAATCGGATACATGGCCCCTGAGTTATTCTACCATAATATTGGGGGAGTATCATACAAGGCCGATGTTTATAGCTTTGGAATGCTTTTGATGGAAATGGCAAGTAGTAGAAGAAATTTGAATCCAAATGCAGAGAAGTCAAGTGAACTTTTCTTTCCTCTCTGGATATATGATCAATTGATTGGAGAAAATGGAATGGAAATGAAAGATATCACCAATGAGGAAAGTAATGATGTGGTAAAGAAAATGTTCTTAGTGGCATTATGGTGTATACAATTAAAACCAAGTGATCGTCCTTCGATGAATAAAGTAGTAGAGATGCTAGAAGGAGATCTTGAGTGCATTGAAATGCCGCCAAAACCTTCCTTGTATCCACATGAAATGATTCAAGGAGATTTAAACAATAACTTAGACCAAACTCTATCAGATGATTCTATTGGATCTACAAGTTATCTTGAGGAAAGTATTATTTATACTTAA 2079 0.3935 MKRRAIATTIIIFLQTCAAFLIHDCPASSFGSIPNISYPFRLSGDPSHCGDKRYELDCENNATVLTLFSGKYHVQEINYKSSKIRVSDAGVVEDATCSFMPRYFLGFGNFSNVYMGPGTDPLHLDQFQASIAYFNCVDAITGDPRYVAVEPTGCGSRGHVYAVVRDPRNNFGATDIRVGCHLKGATFANWGTVPDHNPNKNGSYADIHHMLSHGFVLSWIRVICEDRCGVGKYCLLVNESTGEVQCGEQDCRYVYYANHFIYLCEPTLPAITRILFDIALYCIGIFKGLLQTFVLNKATKYDGIEIEIGKSIGRYVIMRFLFGAVAFITLLIYKWGRRHTSNYEDIEGFLQGNTFMPIRYSYKDIKHMTRGFKEKLGQGGFGLVYKGKLRSGSLVAIKMLSKSKANGQEFISEVATIGRIHHSNVVRLIGFCVEASNRALVYEFMSNGSLDKYIFSKQNNISLTYGQIYEISLGVARGIAYLHQGCDMQILHFDIKPHNILLDENFMPKVSDFGLAKLYPIDKSVVTLTAARGTIGYMAPELFYHNIGGVSYKADVYSFGMLLMEMASSRRNLNPNAEKSSELFFPLWIYDQLIGENGMEMKDITNEESNDVVKKMFLVALWCIQLKPSDRPSMNKVVEMLEGDLECIEMPPKPSLYPHEMIQGDLNNNLDQTLSDDSIGSTSYLEESIIYT 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00984 692 Pfam Wall-associated receptor kinase galacturonan-binding 25 88 IPR025287 GO:0030247
Pumo9g00984 692 PANTHER RUST RESISTANCE KINASE LR10-RELATED 342 659 IPR045874 GO:0004672
Pumo9g00984 692 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672|GO:0006468
Pumo9g00984 692 ProSiteProfiles Protein kinase domain profile. 370 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g00984 692 Gene3D Transferase(Phosphotransferase) domain 1 445 649 - -
Pumo9g00984 692 SMART serkin_6 370 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g00984 692 ProSitePatterns Protein kinases ATP-binding region signature. 376 398 IPR017441 GO:0005524
Pumo9g00984 692 SUPERFAMILY Protein kinase-like (PK-like) 355 642 IPR011009 -
Pumo9g00984 692 FunFam PR5-like receptor kinase 445 653 - -
Pumo9g00984 692 Gene3D Phosphorylase Kinase; domain 1 350 444 - -
Pumo9g00984 692 Pfam Protein kinase domain 373 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g00984 692 FunFam serine/threonine-protein kinase PBS1-like 339 444 - -
Pumo9g00984 692 CDD STKc_IRAK 376 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00984 Pumo-Chr9 24150757 24156669 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00984 337 673 Receptor kinase-like Gene Family AT4G18250 48.116 1.14e-102 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pumo9g00984 Pkinase 2.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00984 - - pvu:PHAVU_001G075800g 792.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00984 9 24150757 24156669 Pumo9g00984 9 24150757 24156669 ECH