Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00980 ATGGAAAGGAGAACAATAGCTATCACCATTTTTCTATTTCTCCAAACCTGCAGTGCTGCCTCGCTTATCCACGATTGTTCTCCTTCCTCATGTGGCAGCATTCACAACATAAGTTATCCCTTTCGACTCAGAGGTGACCCACCCCACTGCGGCGACAAGAGGTACGAATTAGATTGTGAAAACAACGCAACGGTTTTGACTCTGCTTTCGGGGAAATACCATGTACAAGAAATCGATTACAAGAGATACAAAATCCGAGTGAGTGATGCGGGCGTTGTGGAGGACGCTTCTTGCTCCTTCATGCCCCGCTATTTCTTATACTCTGGCAATTTCAGTCGCACAATTCTTGGTCCTGGACCAGATCCACTAAAATTGGACAAATTTCCAGCTTCAATAGCATATTTCAACTGTACGGATCCAGTCACTGATGATCCTAGATATGTTGCTGTGGAAACAACTGGAACTGGTTGCGGCTCCGTAGGACACGTCTATGCTGTTGTTAAAGATTCGAGGCATGGTTTTGGTGTAAATGACATCAAGGTTGGGTGCCAACTGAAGGTGGCTACTTTTGCAAATTTGGGAACAATCAAGCCCAACCAAAAGGTTTCCTATGCTGATGTCCACAACATGCTTTCACATGGATTTGGACTCTCATGGTTATATGTTATTTGTGAAGATCAATGTGGAGAGGGGAAGGATTGCAGTGTTGTCGATGAATCCACGGGTGAAGTTCAATGTGGCCAGCCACTGGTTCAAGGGCTAGACTGTCGCTGGGTCTACAACACGAACCAAGACACATATAAGTGCGATGGCACTGGAGTGATGCTTAACATAGCTGTAGCTATAGGTTTATACGGCATTGGTGTTTATAAAGGTTTTATGCAATTTTTTGGCTTGAATAAAGCTACAGGGTACAATGAAATTGAAGTTGAAATAGGAAAAAGCACAGGAAGATATGTACTACCATACATAATAATCAGATTTTTATTCGGTGTAGTAGCTTTCATTGTGTTGTTGATTTGTAAATGCGGAAGAAGACATAAATCAGACTATGAAAATATCGAAGCTTTTCTACAAGGAAACACCCTTATGCCAATAAGGTACTCATATAAAGATATAAAGCACATGACAAAGGGTTTTAAGGAAAAGCTAGGTCAAGGAGGATTTGGCTTGGTATACAAAGGAATGTTACGTAGTGGGTCGTTTGTAGCAATAAAGATGTTAAATAAATCAAAGGCAAATGGGCAAGAATTCATTAGTGAAGTTGCAACTATTGGAAGAATACACCATACAAATGTGGTACGACTTATTGGATTTTGTGTTGATGAATCAAATCGTGCTCTTGTTTATGAATTCATGTCCAATGGCTCTCTTGATAAATATATTTTCTCCAAGCAAGATAATATCTCTTTAACTTATAGGCAAATATACGAGATATCTCTTGGAGTGGCTTGTGGTATTGCTTATTTACATCAAGGTTGTGACATGCAAATTTTGCATTTTGATATCAAGCCACACAACATCCTTCTTGATGAGAACTATATCCCAAAGGTTTCAGACTTTGGTCTAGCAAAGCTTTATCCTATAAACAGAAGCATTGTCACTTTGACTGCAGCAAGGGGAACAATTGGATACATGGCTCCTGAGTTATTCTACCATAATATTGGGGGAGTATCATACAAGGCTGATGTTTATAGTTTTGGAATGCTTTTGATGGAAATGGCAAATAGGAGAAGAAATTATAGCCCACATATAGATGATTCAAGTGAAAATTTCTTTCCTCTCAGGATATATGATCAATTAAGAGGAGAAAATGAGAAAGAAATGGAAGATATTACCAAGGAGGAATATAATAATGAAGCAAAAAAAATGTTTTTAGTAGCATTATGGTGTATACAACTGAAACCAAGTGATCGTCCTTCAATGAACAAAGTAGTGGAGATGTTAGAAGGAGAACTTGATAACATTGAAATGCCTCCTAAGCCTTCCTTATACCCACAGGATATGATTTCAACTGATTCTATAGGATCTACGAGTTATCTTGAAGAAAGTACTTTTCATTCTGATTTGGAGTATTCTCCTTGA 2085 0.388 MERRTIAITIFLFLQTCSAASLIHDCSPSSCGSIHNISYPFRLRGDPPHCGDKRYELDCENNATVLTLLSGKYHVQEIDYKRYKIRVSDAGVVEDASCSFMPRYFLYSGNFSRTILGPGPDPLKLDKFPASIAYFNCTDPVTDDPRYVAVETTGTGCGSVGHVYAVVKDSRHGFGVNDIKVGCQLKVATFANLGTIKPNQKVSYADVHNMLSHGFGLSWLYVICEDQCGEGKDCSVVDESTGEVQCGQPLVQGLDCRWVYNTNQDTYKCDGTGVMLNIAVAIGLYGIGVYKGFMQFFGLNKATGYNEIEVEIGKSTGRYVLPYIIIRFLFGVVAFIVLLICKCGRRHKSDYENIEAFLQGNTLMPIRYSYKDIKHMTKGFKEKLGQGGFGLVYKGMLRSGSFVAIKMLNKSKANGQEFISEVATIGRIHHTNVVRLIGFCVDESNRALVYEFMSNGSLDKYIFSKQDNISLTYRQIYEISLGVACGIAYLHQGCDMQILHFDIKPHNILLDENYIPKVSDFGLAKLYPINRSIVTLTAARGTIGYMAPELFYHNIGGVSYKADVYSFGMLLMEMANRRRNYSPHIDDSSENFFPLRIYDQLRGENEKEMEDITKEEYNNEAKKMFLVALWCIQLKPSDRPSMNKVVEMLEGELDNIEMPPKPSLYPQDMISTDSIGSTSYLEESTFHSDLEYSP 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00980 694 Pfam Wall-associated receptor kinase galacturonan-binding 26 89 IPR025287 GO:0030247
Pumo9g00980 694 FunFam serine/threonine-protein kinase PBS1-like 346 452 - -
Pumo9g00980 694 Gene3D Transferase(Phosphotransferase) domain 1 453 659 - -
Pumo9g00980 694 ProSiteProfiles Protein kinase domain profile. 378 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g00980 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 498 510 IPR008271 GO:0004672|GO:0006468
Pumo9g00980 694 CDD STKc_IRAK 384 651 - -
Pumo9g00980 694 SMART serkin_6 378 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g00980 694 ProSitePatterns Protein kinases ATP-binding region signature. 384 406 IPR017441 GO:0005524
Pumo9g00980 694 PANTHER RUST RESISTANCE KINASE LR10-RELATED 350 668 IPR045874 GO:0004672
Pumo9g00980 694 Gene3D Phosphorylase Kinase; domain 1 342 452 - -
Pumo9g00980 694 FunFam PR5-like receptor kinase 453 661 - -
Pumo9g00980 694 Pfam Protein kinase domain 381 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g00980 694 SUPERFAMILY Protein kinase-like (PK-like) 363 650 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00980 Pumo-Chr9 24001888 24029916 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00980 26 690 Receptor kinase-like Gene Family AT1G66910 33.671 4.95e-104 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pumo9g00980 Pkinase 1.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00980 - - pvu:PHAVU_001G075800g 845.884