Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00978 ATGTTGCCTAGTCCTGCAGGGCAGCCAATGTTGAAGATTAGAAAGTTCTCCTTGAGAATGACTCCACATAAGAATAATGTTGTTGCAAGGAAAGAGATTGGAAGAGCTCATTGTTGTGACAAGGCAAATGTGGAGAGAGGACCATGGTCAATAGAAGAAGACTCAAAGCTGAAGGAGTACATTGAGAAGTATGGCACTGAAGAGAATTGGATTGCTCTTCCTCAGAAAGCTGGTCTGAAGAGATGTAGAAAAAGTTGCATATTGGAATGGCTTAACCAATTTTTGGCATTGCAATGTCATGGGCAAGCATTTTGGCTGGAGTCTTGTGTGAGGGAGCTTGAATCAGACGAGGCATTTGAGAGTTGTTCACTGGCTATAGATAATAACAATAATTTGCCGATTCCTATCAATTAA 414 0.4106 MLPSPAGQPMLKIRKFSLRMTPHKNNVVARKEIGRAHCCDKANVERGPWSIEEDSKLKEYIEKYGTEENWIALPQKAGLKRCRKSCILEWLNQFLALQCHGQAFWLESCVRELESDEAFESCSLAIDNNNNLPIPIN 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00978 137 ProSiteProfiles Myb-like domain profile. 41 94 IPR001005 -
Pumo9g00978 137 PANTHER OS09G0431300 PROTEIN 34 92 - -
Pumo9g00978 137 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 98 IPR017930 -
Pumo9g00978 137 SMART sant 45 96 IPR001005 -
Pumo9g00978 137 CDD SANT 48 92 IPR001005 -
Pumo9g00978 137 Gene3D - 38 95 - -
Pumo9g00978 137 Pfam Myb-like DNA-binding domain 46 92 IPR001005 -
Pumo9g00978 137 SUPERFAMILY Homeodomain-like 40 95 IPR009057 -
Pumo9g00978 137 FunFam Transcription factor RAX3 39 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00978 Pumo-Chr9 23950538 23954818 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00978 31 101 MYB Transcription Factor Family AT2G36890 69.014 2.01e-28 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo9g00978 Myb_DNA-binding 7.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00978 K09422 - pop:18098238 112.464