Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00977 ATGTTCGCTCTTACCTCAATCAAAGGCATAGGGAGGCAATTTACTAACATTTGCTGCAAGCAGGCTGATGTTGACATGAACAAAAGGGTTGCTTTCATTGCCATTATTTTCTCGTTAGCTGGTGAGATGAGTGCTGCTGAGTTGGATATTCTCATGACTATGGTTGCCAACCCCTGGCAATTAAAGATTCTGGACTGGTGTTTGAACAGGAAGAAGGACTACAAGGATGGGAAGTATTCTCAAGTGGTGTCAAATGCACTTGATATGAAGTAG 273 0.4249 MFALTSIKGIGRQFTNICCKQADVDMNKRVAFIAIIFSLAGEMSAAELDILMTMVANPWQLKILDWCLNRKKDYKDGKYSQVVSNALDMK 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00977 90 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 1 75 - -
Pumo9g00977 90 SUPERFAMILY S13-like H2TH domain 2 58 IPR010979 GO:0003676
Pumo9g00977 90 Gene3D - 1 63 - -
Pumo9g00977 90 Pfam Ribosomal protein S13/S18 2 90 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00977 Pumo-Chr9 23829128 23829521 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00977 1 90 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 73.333 1.24e-41 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00977 K02964 - gmx:100306474 134.035