Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00974 ATGAGAGAGGTTAAGAAGTTTTCTAGAGTTGTTGCAAGGAAAGAGATTGGAAGAGCTCATTGTTGTGACAAGGCAAATGTGAAGAGAGGATCATGGTCAATAGAAGAAGACTCAAAGCTGAAGGAGTACATTGAGAAGTATGGCACTGAAGAGAATTGGATTGCTCTTCCTCAGAAAGCTGGTCTGAAGAGATGTAGAAAAAGTTTTAGATTGGAATGGCTTAACCAATTTTTGGCATTGCAATGTCATGGGCAAGCATTTTGGTTGGAGTCTTGTGTGAGGGAGCTTGAATCAGATGAGGCATTTGAGAGTTGTTCACTGGCTATAGATAATAACAATAATTTACCGATTCCTATTAATTAA 363 0.3857 MREVKKFSRVVARKEIGRAHCCDKANVKRGSWSIEEDSKLKEYIEKYGTEENWIALPQKAGLKRCRKSFRLEWLNQFLALQCHGQAFWLESCVRELESDEAFESCSLAIDNNNNLPIPIN 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00974 120 Pfam Myb-like DNA-binding domain 29 75 IPR001005 -
Pumo9g00974 120 ProSiteProfiles Myb-like domain profile. 24 77 IPR001005 -
Pumo9g00974 120 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 81 IPR017930 -
Pumo9g00974 120 Gene3D - 21 78 - -
Pumo9g00974 120 PANTHER OS09G0431300 PROTEIN 17 75 - -
Pumo9g00974 120 SUPERFAMILY Homeodomain-like 23 78 IPR009057 -
Pumo9g00974 120 FunFam Transcription factor RAX3 22 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00974 Pumo-Chr9 23481749 23482892 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00974 14 84 MYB Transcription Factor Family AT2G36890 69.014 4.38e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo9g00974 Myb_DNA-binding 7.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00974 K09422 - pop:18098238 109.768