Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00973 ATGGCTGTAAGAACACGTTCCAGCGCATCCATCTATGATGTGTTCCTCAGCTTCAGAGGGGAAGATACACGTCTTGGTTTCACCGGCAATCTCTACAAAGCTCTTAGTGACAAGGGAATTCATACTTTCATTGATGATGAGGAGCTTCCAAGAGGAGAGGAAATAACAGCAGCACTTGTGAAGGCAATTGAAGAGTCTAGGATTGCCATCACTGTGCTCTCTACAAACTATGCTTCTTCCTCTTTTTGCTTAGATGAACTTGCAACCATCCTTCACTGCGCCCAGAATAAAGGACTGCTGGTTATACCGGACTTTATATGGTGGATCCTTCTGATGTTAGACACCAGAAAGGTAGTTATAGAGAAACATTGGCTAAGCATGAGAAAAGGTTCAAATCTAAAAAGGAGAAGTTGCAGAAATGGAGGATGGCTTTGCATCAATTGGACTTGGTTCACAAGTGCTGAAGGTAAGGGAGCTTTTGGATGTTGGATTGATGATGTTGTCCGCATCATAGGGATCCATGGAATGGGTGGGTTAGGAAAAACAACACTTGCTCTAGCAGTTTACAATTTGATTTCTGACCATTTTGATGGTTCGTGTTTTCTTCACAATGTGAGAGAAGAATCAAACAAACATGGCTTAAAACACCTCCAAAGCATCCTTCTTTCAGAAATACTGGGAGAGAAGGAAATCAACTTAGCAAGTGTGCAACGAGGAATTTCAATGATACAACAGAGGCTCCAGCGCAAGAAGGTTCTCTTGATTCTAGATGATGTTGACAAGTGCAAGCAATTAAAGGCTATTGCTGGAAGACCTGATTGGTTTGGTCTCGGTAGCAGAGTCATCATTACCACTCGGGATGAACAACTGCTAAAATCTCATGAGGTTGAAAGAACTTATGAGGTGGGGGTTTTGAATAAGAATGATGCTCTTCAATTGCTTACATGGAATGCTTTTAAAAGAGAAAAAGTTGATCCAAGTTATGAGGACATCTTGAATCGTGTAGTAACATATCCTTCTGGCCTTCCATTAGCTTTGGAAGTAATAGGTTCCAACTTGTTTGGAAAAAGTGTAGAAGAATGGGAATCTGCTATCGAACATTATAAAAGAATTCCTAGTGATGAAATCCTAGAGATACTTAAAGTAAGCTTTGATGCTTTGGGGGAAGAACAAAAGAGTGTTTTTCTTGACATTGCTTGTTGCTTGAAAGGGTATAAATGGACAGAGGTTGATGATATACTCCGTGCTATTTATGATCACTGCATGAAATATCATATTGGGGTGTTGGCTGAAAAATCTCTCATAAAGGTTAGCTGTGGTACTGTTGAAATGCACGACTTGGTTCAAGACATGGGTAGAAAAATTGATCGGCAGAGATCACCAGAAGAGCCAAGGAAGCACAAGAGATTATGGTTACCAAAAGATATAATTCAAGTTTTAAAAGACAACACGTTGAGTGAGACTCATGAATAG 1473 0.4019 MAVRTRSSASIYDVFLSFRGEDTRLGFTGNLYKALSDKGIHTFIDDEELPRGEEITAALVKAIEESRIAITVLSTNYASSSFCLDELATILHCAQNKGLLVIPDFIWWILLMLDTRKVVIEKHWLSMRKGSNLKRRSCRNGGWLCINWTWFTSAEGKGAFGCWIDDVVRIIGIHGMGGLGKTTLALAVYNLISDHFDGSCFLHNVREESNKHGLKHLQSILLSEILGEKEINLASVQRGISMIQQRLQRKKVLLILDDVDKCKQLKAIAGRPDWFGLGSRVIITTRDEQLLKSHEVERTYEVGVLNKNDALQLLTWNAFKREKVDPSYEDILNRVVTYPSGLPLALEVIGSNLFGKSVEEWESAIEHYKRIPSDEILEILKVSFDALGEEQKSVFLDIACCLKGYKWTEVDDILRAIYDHCMKYHIGVLAEKSLIKVSCGTVEMHDLVQDMGRKIDRQRSPEEPRKHKRLWLPKDIIQVLKDNTLSETHE 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00973 490 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 398 IPR027417 -
Pumo9g00973 490 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 103 IPR035897 -
Pumo9g00973 490 Pfam NB-ARC domain 169 370 IPR002182 GO:0043531
Pumo9g00973 490 Gene3D - 159 299 IPR027417 -
Pumo9g00973 490 SMART AAA_5 167 308 IPR003593 GO:0016887
Pumo9g00973 490 SMART till_3 11 158 IPR000157 GO:0007165
Pumo9g00973 490 SUPERFAMILY "Winged helix" DNA-binding domain 374 481 IPR036390 -
Pumo9g00973 490 Pfam TIR domain 12 103 IPR000157 GO:0007165
Pumo9g00973 490 Gene3D - 9 108 IPR035897 -
Pumo9g00973 490 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 480 IPR044974 GO:0006952
Pumo9g00973 490 PRINTS Disease resistance protein signature 246 260 - -
Pumo9g00973 490 PRINTS Disease resistance protein signature 339 353 - -
Pumo9g00973 490 PRINTS Disease resistance protein signature 170 185 - -
Pumo9g00973 490 ProSiteProfiles TIR domain profile. 10 131 IPR000157 GO:0007165
Pumo9g00973 490 Gene3D - 304 388 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00973 Pumo-Chr9 23237406 23239177 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00973 168 490 WRKY Transcription Factor Family AT5G45050 34.356 5.59e-50 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00973 - - gmx:100817954 531.561