Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00966 ATGTTTAACATAATTACCGCTATAGGTTTATACGGCATTGGCGTTTATAAAGGTTTTATGCAATTTTTTGGCTTGAATAAAGCTACAGGGTACAATGAAATTGAAGTTGAAATAGGAAAAAGCACAGGAAGATATGTACTACCATACATAATAATCAAATTTTTATTGGGTGTAGTAGCTTTCATTGTGTTGTTGATTTGTAAATGGGGTAGAAGACATAAATCAGACTATGAAAATATCGAAGCTTTTCTACAAGGAAACACCCTTATGCCAATAAGGTACTCATATAAAGATATAAAGCACATGACAAAGGGTTTTAAAGAAAAGCTAGGTCAAGGAGGATTTGGCTTGGTATACAAAGGAATGTTAAGTAGTGGGTCGTTTGCAGCAATAAAGATGTTAAATAAATCAAAGGCAAATGGGCAAGAATTCATTAGTGAAGTTGCAACTATTGGAAGAATACACCATACAAATGTGGTACGACTTATTGGATTTTGTGTTGAGGAATCAAATCATGCTCTTGTTTATGAATTCATGTCCAATGGCTCTCTTGATAAATATATTTTCTCCAAGCAAGATAGTATCTCTTTAACTTACAGGCAAATATACGAGATATCTCTTGGAGTGGCTCATGGTATTGCTTATTTACATCAAGGTTGTGACATGCAAATTTTGCATTTTGATATCAAGCCACACAACATCCTTCTTGATGAGAACTATATCCCAAAGGTTTCAGACTTTGGTCTAGCAAAGCTTTATCCTATAAACAAAAGCATTGTCACTTTGACTGTAGCAAGGGGAACAATTGGATACATGGCTCCTGAGTTATTCTACCATAATATTGGGGGAGTATCATACAAGGCTGACGTTTATAGTTTTGGAATGCTTTTGATGGAAATGGCAAATAGGAGAAGAAATTATAGCCCACATATAGATGATTCAAGTGAAAATTTCTTTCCTCTCAGGATATATGATCAATTAAGTGGAGAAAATAAGAAAGAAATGGAAGATATTACCAAGGAGGAATATAATAATGAAGCAAAAAAAATGTTTTTAGTAGCATTATGGTGTATACAACTGAAACCAAGTGATCGTCCTTCAATGAACAAAGTAGTGGAGATGTTAGAAGGAGAACTTGATAACATTGAAATGCCTCCTAGGCCTTCCTTATATCCACAGGATATGATTTCAACTGATTCTATAGGATCTACGAGTTATCTTGAAGAAAGTACTTTTCATTCTGATTTGGAGTATTCTCCTTGA 1263 0.3413 MFNIITAIGLYGIGVYKGFMQFFGLNKATGYNEIEVEIGKSTGRYVLPYIIIKFLLGVVAFIVLLICKWGRRHKSDYENIEAFLQGNTLMPIRYSYKDIKHMTKGFKEKLGQGGFGLVYKGMLSSGSFAAIKMLNKSKANGQEFISEVATIGRIHHTNVVRLIGFCVEESNHALVYEFMSNGSLDKYIFSKQDSISLTYRQIYEISLGVAHGIAYLHQGCDMQILHFDIKPHNILLDENYIPKVSDFGLAKLYPINKSIVTLTVARGTIGYMAPELFYHNIGGVSYKADVYSFGMLLMEMANRRRNYSPHIDDSSENFFPLRIYDQLSGENKKEMEDITKEEYNNEAKKMFLVALWCIQLKPSDRPSMNKVVEMLEGELDNIEMPPRPSLYPQDMISTDSIGSTSYLEESTFHSDLEYSP 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00966 420 FunFam PR5-like receptor kinase 179 386 - -
Pumo9g00966 420 FunFam serine/threonine-protein kinase PBS1-like 72 178 - -
Pumo9g00966 420 Gene3D Phosphorylase Kinase; domain 1 68 178 - -
Pumo9g00966 420 SMART serkin_6 104 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g00966 420 Pfam Protein kinase domain 107 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g00966 420 ProSiteProfiles Protein kinase domain profile. 104 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g00966 420 PANTHER RUST RESISTANCE KINASE LR10-RELATED 76 394 IPR045874 GO:0004672
Pumo9g00966 420 Gene3D Transferase(Phosphotransferase) domain 1 179 384 - -
Pumo9g00966 420 SUPERFAMILY Protein kinase-like (PK-like) 89 376 IPR011009 -
Pumo9g00966 420 ProSitePatterns Protein kinases ATP-binding region signature. 110 132 IPR017441 GO:0005524
Pumo9g00966 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00966 Pumo-Chr9 23150187 23159566 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00966 55 416 Receptor kinase-like Gene Family AT1G66910 44.974 1.28e-102 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pumo9g00966 Pkinase 1.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00966 - - pvu:PHAVU_001G075800g 637.876