Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00962 ATGCTGAGTTTCCAAAATTTTTCTCTTCTATTGACGGTGTTGTTTCTGCTATTGAAGCCCGCAATAGGCAAGAATGGCTGCACGGACAAGTGTGGACGCGTTCGCATTCAGTTTCCATTTTACCTCAGAAATAGCAAGTTGAATCACATCACCACGGGCTATCCTCCTGGGTTTGATCTGTTATGTACGGATGCAGATGAGACTGTGCTGGAGCTGCCTTCTGTTCCAACAAAATTGTTTGTCAAAAAAATAGATTACAAGTTACAGCAAATCCAAATCTACGACCCTCAAAATTGCCTTCCCATGGAACTCATAAAACTCGGAAATTCGTCTATTTCTCCGTTTAAATTCCAATCGTTTGGTGAGCGTAATGTTTCCTTCTTCCGCTGCAACTCAATGTCATGCCCAATTTTGCAACTTGGATCTGATGAGGACTTTATTGATCCTGAAATAGTATCCTGCACCAAGGTGAGTGATGTTTTCTCCGTCCAGTGGCAAGTGGATAATGACTTGAGGAACACCGTGGTTATGGAATGGTCCAACCCCGACTGCAGCTCCTGTGAAGCACAGGGGCATAAATGTAAATACAAGAATGGTACCCAAGGTAAAACTGAATGTTTCATTTGCCCAACAAACGGGATTCGAAAATCAACTATTGTACTTATTGCTGCAGGGGGAATAGTTGGTTTGATTCTTTTGCTGCTGCTGTTCAAGGCATTGTTTCATGTGTATGACCATTATAAGATGAAAGGAGAAGACCAGGCTCGGATAGAGAAATTCTTGGAGGATTATAGGGCAATGAAGCCTACCAGATTCACTTATGCTGACATCAAGAGAATCACAAATGGGTTTAGTGAAAGCTTAGGGGAAGGAGCTCATGGAGCCGTCTTCAAAGGGATGCTCTCCCGAGAGATTCTCGTTGCTGTGAAGATACTCAACGATACAGTGGGAGACGGAAAGGATTTCATAAACGAAGTGGGAACCATGGGCAAAATTCATCATGTTAATGTCGTTCGCTTGCTTGGATTCTGTGCAGATGGATTCCACCGTGCTCTCGTCTTTGATTTCTTCCCAAATGGATCGCTGCAGAGATTCTTGGCTCCACCGGACAACAAGGATGTTTTCCTTGGTTGGGAGAAGTTGCAACAAATTGCTCTTGGTGTTGCCAGAGGGATTGAGTATCTCCACCTTGGCTGTGACCATAGAATACTTCACTTTGACATCAATCCTCACAATGTTTTAATAGACGACCTCTTCGTTCCAAAAATCACTGATTTTGGACTTGCCAAGTTGTGTCCCAAAAATCAAAGTACAGTTTCTATGACCGCTGCCAGGGGAACCTTAGGCTACATTGCCCCTGAAGTTTTCTCAAGAAACTTTGGTAATGTGTCTTATAAGTCTGACATCTACAGTTATGGAATGTTGCTGCTAGAAATGGTGGGAGGAAGAAAGAATACAAATATGTCAGCAGAGGAAAGTTTCCGAGTTCTGTACCCTGAATGGATCCATAATTTGCTCGAAGGCAGAGACGTGCAAGTTACTATTGAGGATGAGGGAGATGATAGAATTGCGAGGAAACTTGCCATTGTAGGACTTTGGTGCATTCAGTGGAATCCAGTAGACCGTCCATCCATGAAAACTGTGGTACAAATGCTTGAAGGAGATGGAGACAAGTTAATTGCACCCCCTACTCCTTTTGACAAGACCGGTTCTTCTAGAACAAGTGCAGTTGTTCCAGCAAGACGCCAGAATTTCGAGTTGGAAATTATTCATGAAATAGAAGAGTAA 1788 0.4312 MLSFQNFSLLLTVLFLLLKPAIGKNGCTDKCGRVRIQFPFYLRNSKLNHITTGYPPGFDLLCTDADETVLELPSVPTKLFVKKIDYKLQQIQIYDPQNCLPMELIKLGNSSISPFKFQSFGERNVSFFRCNSMSCPILQLGSDEDFIDPEIVSCTKVSDVFSVQWQVDNDLRNTVVMEWSNPDCSSCEAQGHKCKYKNGTQGKTECFICPTNGIRKSTIVLIAAGGIVGLILLLLLFKALFHVYDHYKMKGEDQARIEKFLEDYRAMKPTRFTYADIKRITNGFSESLGEGAHGAVFKGMLSREILVAVKILNDTVGDGKDFINEVGTMGKIHHVNVVRLLGFCADGFHRALVFDFFPNGSLQRFLAPPDNKDVFLGWEKLQQIALGVARGIEYLHLGCDHRILHFDINPHNVLIDDLFVPKITDFGLAKLCPKNQSTVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTNMSAEESFRVLYPEWIHNLLEGRDVQVTIEDEGDDRIARKLAIVGLWCIQWNPVDRPSMKTVVQMLEGDGDKLIAPPTPFDKTGSSRTSAVVPARRQNFELEIIHEIEE 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00962 595 PANTHER RUST RESISTANCE KINASE LR10-RELATED 254 571 IPR045874 GO:0004672
Pumo9g00962 595 Pfam Protein kinase domain 286 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g00962 595 ProSitePatterns Protein kinases ATP-binding region signature. 288 310 IPR017441 GO:0005524
Pumo9g00962 595 FunFam serine/threonine-protein kinase PBS1-like 250 356 - -
Pumo9g00962 595 Pfam Wall-associated receptor kinase galacturonan-binding 27 95 IPR025287 GO:0030247
Pumo9g00962 595 Gene3D Phosphorylase Kinase; domain 1 256 356 - -
Pumo9g00962 595 FunFam PR5-like receptor kinase 357 562 - -
Pumo9g00962 595 SUPERFAMILY Protein kinase-like (PK-like) 264 553 IPR011009 -
Pumo9g00962 595 Gene3D Transferase(Phosphotransferase) domain 1 357 559 - -
Pumo9g00962 595 ProSiteProfiles Protein kinase domain profile. 282 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00962 Pumo-Chr9 22948442 22950889 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00962 181 565 Receptor kinase-like Gene Family AT1G66910 41.463 2.39e-103 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pumo9g00962 Pkinase 1.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00962 - - gmx:100819302 1057.36