Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00960 ATGAATTACACCGTTTTGAGCGAACCCGACATCAAGCGACATCAAGACGCAAACATCAACCAGGTTTTGCTCATCCACCACGAATGGAGTGTGCTCAAAGTGCACGAAGTATGGTTTGATGATGAAGAAAGAGTTCGCAAAGCTGTAGGGTTGTTAAAGCAGCATGAACCCCAGAAGAAGTACGTGGATACAAGCATCAACGAGGGCCCTGATCAGTGCTTGAAACTTAGATTCCCTCAATCCTCTTGTGATGCAGTTGTGGGTGGAGACATGATTCGTAAACTTGCAAATTGTGAGTATGCTGTGAGTTATGAACCAGATGGTGTTAGAACTAATTCAGATGTTACCTGTCTTTGTTATCACTCCTTTTGTTGGAGTTATGGCGAAGAAGCTCATAGCCCCATGGATTGTGAAACTGCTAAACACTGGATCATAAGGAATGATTATGAATCATATATGAACACTGCTTGGATTCTTACTAATACCAAATCTTGTCCTGAGTGCAAGAAACCCATTGAGAAAATCAACGGCTGCGTCCATTTTCCTGACAAGGATATTTACAAGAAGGAAGTGGAGAGAAATGTGGTGCTTAATTATTTGGAGGATCGCACTCATTGTTATAAGCGTTGGGTCAACCATGATTTGTCAAGAAAAAATGCGCTTAATCATCTAATGTTATTGATGAATGGTCGGCATACAAAGAGACTGAGTATGTTATATCGAAGGTCAGAAGATGATTTTGAGTTCATAAAGGCAGCGTGGCAACAAGTGGTTGAGTCTATAAGAGTGCTTAAATGGACTTATCCATATGGATTCTATCTCCTTCAGAGTGAACAAGCTAAAAGAGAGTTTCTTGAGTACTCACAACGCGAGGTTGAAGTTATTTTGGAAAAGCTTTGTCATTGCACAAGGGAGGAACTAGGGGAGTTTCTTTATGCTAATAAGCCAAAAGAGGCATTTGATAATTTTCGTTGGAAGTTAATGGAACTTACCTGTGTCACCAAGGCTTATTTTGAGAATCTGGTGAAAGCCTTACAGAATGGGCTGGCTAGGGTGCATGTATAA 1065 0.4075 MNYTVLSEPDIKRHQDANINQVLLIHHEWSVLKVHEVWFDDEERVRKAVGLLKQHEPQKKYVDTSINEGPDQCLKLRFPQSSCDAVVGGDMIRKLANCEYAVSYEPDGVRTNSDVTCLCYHSFCWSYGEEAHSPMDCETAKHWIIRNDYESYMNTAWILTNTKSCPECKKPIEKINGCVHFPDKDIYKKEVERNVVLNYLEDRTHCYKRWVNHDLSRKNALNHLMLLMNGRHTKRLSMLYRRSEDDFEFIKAAWQQVVESIRVLKWTYPYGFYLLQSEQAKREFLEYSQREVEVILEKLCHCTREELGEFLYANKPKEAFDNFRWKLMELTCVTKAYFENLVKALQNGLARVHV 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00960 354 Gene3D - 183 352 - -
Pumo9g00960 354 Gene3D - 133 182 - -
Pumo9g00960 354 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 59 267 IPR031127 GO:0004842|GO:0016567
Pumo9g00960 354 ProSiteProfiles TRIAD supradomain profile. 1 217 IPR044066 -
Pumo9g00960 354 SUPERFAMILY RING/U-box 97 145 - -
Pumo9g00960 354 SUPERFAMILY RING/U-box 157 181 - -
Pumo9g00960 354 Pfam IBR domain, a half RING-finger domain 96 137 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00960 Pumo-Chr9 22795793 22798107 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00960 2 352 ARIADNE family AT1G05890 36.266 1.89e-84 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00960 K11968 - gmx:100801350 504.597