Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00959 ATGCGTGAGGCTGCACTGTGGAGAAGATATCAAGGTATTTCCATGGAGGGTGATGAAGAGCTTCTGGCACAAACAGAGGTTAAAGTGGAACCAAAAAGGGATGAGTGGATGACAACACTGCCTCCGGAAAGGAAATTTAGCCGGGGGCCAAAGGAAGGTAGAGGTGATACTAGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAGAAAGCAAAGATGAATTATTTGGAAGCATGCATTGAAGCTACTGCACTAGCTTCAAATGAAGACGAAAAGAAAAGGGCCAGTGCGGATGCAGAATTGGTGGACAAATACAATAAAGCAAAACGGTCAAAAACATTGGTGCAAAAGCATCAAGAAGAGGTTGGTAGCAAATCCAAGAAAAAGTTCAAGCAACAGTCCAAACAACAGCCCGAGAATGAAGACTGGGTGGGTCAACACCCGTGGAAGCCATGGGACCGTGAAAAGGATCTGACAGCTGGAAGGAAAACTGTAAATTTTGATTCAGAAAGCATGACTAAAGGCTTATCTTCAAGGAAGAAGGACTACAAGGATGGGAAGTATTCTCAAGTGGTGTCAAATGCACTTGATATGAAGTTGAGGGATGACTTGGAGAGACTCAAGAAAATCAGGAATCATCGAGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCATACCAAGACCACTGGTCGCAGGGGTAAAACTGTTGGTGACTCTAAGAAGCGCTGA 738 0.458 MREAALWRRYQGISMEGDEELLAQTEVKVEPKRDEWMTTLPPERKFSRGPKEGRGDTSVWTDTPSDRAQKAKMNYLEACIEATALASNEDEKKRASADAELVDKYNKAKRSKTLVQKHQEEVGSKSKKKFKQQSKQQPENEDWVGQHPWKPWDREKDLTAGRKTVNFDSESMTKGLSSRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGDSKKR 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00959 245 Coils Coil 239 245 - -
Pumo9g00959 245 MobiDBLite consensus disorder prediction 105 136 - -
Pumo9g00959 245 Gene3D 30s ribosomal protein s13, domain 2 185 235 IPR027437 -
Pumo9g00959 245 FunFam 40S ribosomal protein S18 185 236 - -
Pumo9g00959 245 Pfam Protein of unknown function (DUF3752) 31 179 IPR022226 -
Pumo9g00959 245 MobiDBLite consensus disorder prediction 146 163 - -
Pumo9g00959 245 ProSitePatterns Ribosomal protein S13 signature. 214 227 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pumo9g00959 245 MobiDBLite consensus disorder prediction 32 52 - -
Pumo9g00959 245 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 179 - -
Pumo9g00959 245 MobiDBLite consensus disorder prediction 32 66 - -
Pumo9g00959 245 MobiDBLite consensus disorder prediction 221 245 - -
Pumo9g00959 245 Pfam Ribosomal protein S13/S18 166 235 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pumo9g00959 245 SUPERFAMILY S13-like H2TH domain 187 240 IPR010979 GO:0003676
Pumo9g00959 245 ProSiteProfiles Ribosomal protein S13 family profile. 192 238 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pumo9g00959 245 MobiDBLite consensus disorder prediction 105 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00959 Pumo-Chr9 22709901 22715464 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00959 178 245 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 95.588 4.28e-41 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00959 - - gmx:100788598 312.768