Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00937 ATGATAATTAAGCGGAACCTGAAATCCCAAATGCCGAGTCTGAAACGGCGGCGACTCGGCGACGCGGCGGGCGAGGACGACGGCGAGTGCGCCGCCGCGGAGAGGAAGAAGAGGAGGAAGACGAACGGGTACTGCTACCCGCTGAATCTCCTCGCCGGCGTAATTCCGGCGAGTTTTCGAGGGCTGCTCGGCGCGCCGGAGAGAGGCTGCCACGTGGCGCCGAGCTTGGAGGGCGGCGGCGGCAAGAAGAAGGCTTCGCGGCCGGCGTTGGTAAGGACGTCGCGGGGGCGGGTGCAGGCGCTGCCGTCGCGGTTCAACGATTCGGTGATGGAGGATTGGAGGAAGGACAGCAAGGTAGATGAAGGTGAATTAGAAGAAGAATTTGAGAGTGTGAAGAAGTCGAGAAAAGGAAAGAGCAATAAGGGAAGAGGGTATTCTGCATTGTGTGAGGATGTGCTGCATAAGAATTTTGATGCTGCCAGCAAGGGATTTGGGGAATTGAGGGGCAATGATGAGTGTGTTTTGAAGGAGGAGGAGAAGAAAGAGGGGTTGTATGGACCAGAAGACTTTTATGCTGGGGATATAGTGTGGGCCAAGGCAGGGAGGAAGGAACCTTTTTGGCCTGCCATTGTCATTGATCCTATGTGTCAGGCACCGGAGCTGGTTTTGAAGTCCTGTATTCCTGATGCTGCCTGTGTCATGTTTCTTGGCTATGCTGGGAGTGAAAATCAAAGGGACTATGCGTGGGTCAAGTATGGGATGATTTTTCCGTTTATCGATCATGTAGACAGGTTTCAGGGGCAGTCTGAATTGGGTTGCTGTAACTATAATCCCTCTGAATTTCAAATGGCAATAGACGAGGCATTTTTGGCAGATCAGGGCTTTACAGAGAAGTTGATAGCAGATATAAACACAGCAGCTGGTAACACTAGTTGTGGTGATTCTGTACTGAAAGGCTTTCAGGAGGTCACTGCTTCAAACCAGAATGTAGCATTTCACTTTCTGAACCAGGATTTATTTGATAAGAAAGACGGGCGGTCTTGTGAAGTATGTGGATTGGAGCTTCGTTTCAAAATGTCAAAGAAAACGAAGGATTTGATTCCTGGCAGCCAATTTCTCTGTAAAACATGTGCTAGGTTAACAAAATCAAAACATTATTGTGGCATATGCAAGAAAATTTGGAATCATTCAGATAGTGGAAGTTGGGTGCGCTGTGATGGATGTAAAGTATGGGTGCATGCAGAATGCGACAAAATTTCCAGCAACCTTTTCAAGAATCTTGGAGGATCTGATTATTTCTGTCCTACATGCAAAATTAAGTTTGATTTTGAGTTATCTGATTCAGACAAATCACAGCCAATAGTCAAATGGAAAAAAAACAGTGGGCAGCTAGTGCTTCCTAACAAGGTCACTGTTCTCTGCAATGGTGTGGAAGGCATATATTTTCCAAGCCTTCACTTAGTTGTATGCAAGTGTGGTTTTTGCGAGACTAAAAAACAACCACTTAGAGAATGGGAACAGCACACAGGTTCCAAATTTAGAAATTGGAGGACAAGTGTTCGGGTGAAAGGATCCATGCTATCGCTGGAAAAATGGATGCTGCAATTGGCTGAGTTTCATGCTAATGCTGTAGTTTCTGTGAAACCTAAAAAACCTTCCTTAAAAGAAAGGAAACAGAAGTTGCTTACCTTTCTTCAAGAGAAGTATGAACCAGTCTGGGCTAAGTGGACTACAGAACGATGTGCTGTATGTAGATGGGTTGAAGATTGGGATTACAACAAAATTATCATTTGCAACAGATGTCAAATAGCCGTTCATCAAGAATGTTACGGAGCAAGAAATGTTCGAGATTTTACGTCATGGGTTTGTAAAGCTTGTGAAACACCTGACATCAAGCGGGAATGTTGTCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCAACCGATGTTGACACATTATGGGTTCATGTCACTTGTGCTTGGTTTCGACCTGAAGTATCTTTTGCTAGTGATGAAAAGATGGAGCCTGCTTTGGGTATTCTGAGTATTCCGTCGAATTCTTTTGTGAAGATTTGTGTTATTTGTAAGCAAATTCATGGTTCGTGCACACAATGTTGCAAGTGTTCCACTTATTTCCATGCCATGTGTGCATCAAGGGCTGGTTATCGCATGGAGTTGCATTGTATGGAGAAAAATGGTAAACAGACAACAAGAATGGTTTCTTATTGTGCTTACCACAGAGCTCCCAATCCAGACACTGTTTTGATTATGCAAACCCCTCTTGGGGTCATTTCAACCAAAAGCCTTCTTCAAACTAAGAAAAAAGCTGGGTCAAGGTTAATTTCATCTAAAAGAATAAAGGTTGAAGACACTTCTCCTGCAGAGAATACTAGAGATGAGCCATTCTCTGCTGCTAGGTGTCGAATCTTTCAAAGAACAAATCATACAAAAAAGGTAGCTTAG 2463 0.4462 MIIKRNLKSQMPSLKRRRLGDAAGEDDGECAAAERKKRRKTNGYCYPLNLLAGVIPASFRGLLGAPERGCHVAPSLEGGGGKKKASRPALVRTSRGRVQALPSRFNDSVMEDWRKDSKVDEGELEEEFESVKKSRKGKSNKGRGYSALCEDVLHKNFDAASKGFGELRGNDECVLKEEEKKEGLYGPEDFYAGDIVWAKAGRKEPFWPAIVIDPMCQAPELVLKSCIPDAACVMFLGYAGSENQRDYAWVKYGMIFPFIDHVDRFQGQSELGCCNYNPSEFQMAIDEAFLADQGFTEKLIADINTAAGNTSCGDSVLKGFQEVTASNQNVAFHFLNQDLFDKKDGRSCEVCGLELRFKMSKKTKDLIPGSQFLCKTCARLTKSKHYCGICKKIWNHSDSGSWVRCDGCKVWVHAECDKISSNLFKNLGGSDYFCPTCKIKFDFELSDSDKSQPIVKWKKNSGQLVLPNKVTVLCNGVEGIYFPSLHLVVCKCGFCETKKQPLREWEQHTGSKFRNWRTSVRVKGSMLSLEKWMLQLAEFHANAVVSVKPKKPSLKERKQKLLTFLQEKYEPVWAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWVCKACETPDIKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCMEKNGKQTTRMVSYCAYHRAPNPDTVLIMQTPLGVISTKSLLQTKKKAGSRLISSKRIKVEDTSPAENTRDEPFSAARCRIFQRTNHTKKVA 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00937 820 FunFam Histone-lysine N-methyltransferase 568 629 - -
Pumo9g00937 820 CDD PHD_TCF19_like 387 437 - -
Pumo9g00937 820 SUPERFAMILY FYVE/PHD zinc finger 576 643 IPR011011 -
Pumo9g00937 820 MobiDBLite consensus disorder prediction 74 95 - -
Pumo9g00937 820 CDD PHD_ATX3_4_5_like 580 626 IPR042011 -
Pumo9g00937 820 Gene3D - 187 295 - -
Pumo9g00937 820 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 818 IPR025780 -
Pumo9g00937 820 SMART PHD_3 691 747 IPR001965 -
Pumo9g00937 820 SMART PHD_3 580 627 IPR001965 -
Pumo9g00937 820 SMART PHD_3 386 438 IPR001965 -
Pumo9g00937 820 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 574 629 IPR013083 -
Pumo9g00937 820 Pfam PHD-finger 593 627 - -
Pumo9g00937 820 SUPERFAMILY FYVE/PHD zinc finger 385 441 IPR011011 -
Pumo9g00937 820 ProSiteProfiles Zinc finger PHD-type profile. 578 629 IPR019787 -
Pumo9g00937 820 FunFam Histone-lysine N-methyltransferase 630 749 - -
Pumo9g00937 820 Pfam PHD-zinc-finger like domain 634 746 - -
Pumo9g00937 820 ProSiteProfiles PWWP domain profile. 192 261 IPR000313 -
Pumo9g00937 820 PANTHER PHD FINGER PROTEINS 86 461 - -
Pumo9g00937 820 CDD ePHD_ATX3_4_5_like 635 746 IPR041955 -
Pumo9g00937 820 SUPERFAMILY Tudor/PWWP/MBT 185 291 - -
Pumo9g00937 820 ProSitePatterns Zinc finger PHD-type signature. 581 626 IPR019786 -
Pumo9g00937 820 ProSiteProfiles Extended PHD (ePHD) domain profile. 632 747 IPR034732 -
Pumo9g00937 820 MobiDBLite consensus disorder prediction 1 26 - -
Pumo9g00937 820 CDD PWWP_AtATX3-like 191 297 - -
Pumo9g00937 820 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 630 749 IPR013083 -
Pumo9g00937 820 ProSiteProfiles Zinc finger PHD-type profile. 384 440 IPR019787 -
Pumo9g00937 820 Pfam PWWP domain 193 288 IPR000313 -
Pumo9g00937 820 Pfam PHD-finger 386 439 IPR019787 -
Pumo9g00937 820 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 381 441 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00937 Pumo-Chr9 21342148 21350885 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00937 581 746 C2H2 Transcription Factor Family AT3G14740 33.333 1.94e-19 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pumo9g00937 zf-HC5HC2H_2 2e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00937 - - gmx:100775276 1464.13