Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo9g00928 | ATGGAGATGGACAGCATTGACTGTGTGTCATTCTCTGATGGCATGGATGAGGATGAGATCCAACACCACACTCTGCATCCTCATCACCACTCTGAGTTTTCTTCTAACAAGCCTCGCAATGGTGGTGCTAATAATAACAACAATGTCATGGGAGCCACGGCCATTGCTCCTGCAACCAGCGTTCATGAGTTGCTAGAATGCCCTGTTTGCACCAATTCAATGTACCCCCCGATTCATCAGTGCCACAATGGGCACACATTGTGTTCCACATGTAAAACAAGGGTGCACAATCGATGTCCCACTTGTAGACAGGAGCTTGGAGATATTAGGTGCCTGGCACTGGAGAAGGTGGCTGAATCACTTGAGTTACCTTGCAAGTTACTACTCCCTTGGATGTCCTGA | 402 | 0.4801 | MEMDSIDCVSFSDGMDEDEIQHHTLHPHHHSEFSSNKPRNGGANNNNNVMGATAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKLLLPWMS | 133 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo9g00928 | 133 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 44 | 126 | - | - | |
Pumo9g00928 | 133 | SUPERFAMILY | RING/U-box | 52 | 109 | - | - | |
Pumo9g00928 | 133 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 50 | 128 | IPR013083 | - | |
Pumo9g00928 | 133 | ProSiteProfiles | Zinc finger RING-type profile. | 67 | 103 | IPR001841 | - | |
Pumo9g00928 | 133 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 11 | 119 | - | - | |
Pumo9g00928 | 133 | MobiDBLite | consensus disorder prediction | 25 | 47 | - | - | |
Pumo9g00928 | 133 | CDD | RING-HC_SIAHs | 65 | 103 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo9g00928 | Pumo-Chr9 | 21192925 | 21198671 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo9g00928 | 43 | 126 | C3H Transcription Factor Family | AT2G41980 | 67.816 | 9.33e-36 | 123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo9g00928 | K04506 | - | twl:119985667 | 223.787 |