Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00928 ATGGAGATGGACAGCATTGACTGTGTGTCATTCTCTGATGGCATGGATGAGGATGAGATCCAACACCACACTCTGCATCCTCATCACCACTCTGAGTTTTCTTCTAACAAGCCTCGCAATGGTGGTGCTAATAATAACAACAATGTCATGGGAGCCACGGCCATTGCTCCTGCAACCAGCGTTCATGAGTTGCTAGAATGCCCTGTTTGCACCAATTCAATGTACCCCCCGATTCATCAGTGCCACAATGGGCACACATTGTGTTCCACATGTAAAACAAGGGTGCACAATCGATGTCCCACTTGTAGACAGGAGCTTGGAGATATTAGGTGCCTGGCACTGGAGAAGGTGGCTGAATCACTTGAGTTACCTTGCAAGTTACTACTCCCTTGGATGTCCTGA 402 0.4801 MEMDSIDCVSFSDGMDEDEIQHHTLHPHHHSEFSSNKPRNGGANNNNNVMGATAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKLLLPWMS 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00928 133 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 44 126 - -
Pumo9g00928 133 SUPERFAMILY RING/U-box 52 109 - -
Pumo9g00928 133 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 128 IPR013083 -
Pumo9g00928 133 ProSiteProfiles Zinc finger RING-type profile. 67 103 IPR001841 -
Pumo9g00928 133 FunFam E3 ubiquitin-protein ligase SINAT3 11 119 - -
Pumo9g00928 133 MobiDBLite consensus disorder prediction 25 47 - -
Pumo9g00928 133 CDD RING-HC_SIAHs 65 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00928 Pumo-Chr9 21192925 21198671 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00928 43 126 C3H Transcription Factor Family AT2G41980 67.816 9.33e-36 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00928 K04506 - twl:119985667 223.787