Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00927 ATGACCCTGCGCCACGTAAGCCGAGCGTTCTACGCCTCCAGCGGCCTCTCGTTCGCCGCGACGAACCCAAAGGTCCGCGCGGCCTACGACGACTGCCTCGAGTTGTTGGAGGAGTCGATGGACGCGCTCTCGCGGTCCCTCGACTCCATCCTCTCGCCTTCGGCGGTATCCGGCAGCGGAGGCGGCGAGGTCAGACCCGCTGCCGCCGTAGGATCCACCGAAGACGTGATGACGTGGCTCAGCGCCGCGCTCACTAATCAGGACACGTGTGCGGAGGGGCTCGAGGATACGAGCGGGAGCGTGAAGGACCAGATGGTTGATAACTTGAAGGACTTGTCCGAACTCGTGAGCAATTGTCTCGCGATATTCTCGGCAAGTGGAAGTGGTGATTTCTCGGGGGTGCCGATACAGAACAAGAGACGATTAATGGAAAAGAAAGAAGAAGAAAAAGAAGAAGAAGAAGAGGAGAATGTTAACCGCGATATCTCGCGAAAATTTCCGAGATGGTTGAATAAGCGAGATAGGAGATTATTGAGTTTACCAGTGTCGGCAATTCAGGCAGATATTACCGTGTCTAAGAACGGTAACGGAACAGTGAAGACAATTACCGAGGCGATTAAGAAAGCGCCGGAACATAGTACTCGCCGGTTCATAATTTACGTGAGGGCAGGAAGGTATGAGGAGAATAATTTGAAGGTGGGGAGAAAGAAAACGAATGTGATGTTCATAGGGGACGGGAAGGGCAAAACAGTCATCACAGGGAAAAAGAATGTGATAGATGGCATGACCACATTCCACTCTGCATCCTTCGCTGCTAGTGGTGCTGGATTCATTGCAAGAGACATCACGTTCGAGAACTACGCCGGACCGGCGAAGCACCAGGCGGTGGCACTCCGTGTCGGAGCCGACCATGCGGTGGTGTACCGGTGCAACATTGTCGGGTACCAAGACTCATGCTATGTGCATTCTAACCGTCAATTTTTCCGTGAATGTAACATTTACGGCACTGTGGACTTCATATTTGGCAATGCTGCGGTGGTTTTCCAAAAGTGCAACATCTATGCTCGTAAGCCCATGGCCCAACAGAAGAACACCATCACAGCCCAAAACAGAAAAGACCCAAATCAGAATACGGGTATATCCATACACAATTGTCAGATCCTACCCGCCCCAGATCTCGCCCCGGTTAAGGGCAGCTTCCCCACCTACTTGGGCCGTCCATGGAAGCAGTACTCTAGAACCGTATACTTAGTATCCTACATGGGTGACCACATACATCCTCGTGGATGGTTGGAGTGGAATGGAGACTTTGCTTTGAACACATTGTATTATGGTGAGTACATGAATTCTGGGCCGGGTGCAGCTGTGGGCCAACGGGTCCAATGGCCCGGGTACCGGGTCATTAAGTCTACCGTGGAAGCGAATCGGTTCACGGTGGCCCAATTCATATCCGGGTCGGCCTGGTTACCATCAACAGGAGTGGCCTTTGCGGCCGGGTTATCCACATGA 1509 0.5262 MTLRHVSRAFYASSGLSFAATNPKVRAAYDDCLELLEESMDALSRSLDSILSPSAVSGSGGGEVRPAAAVGSTEDVMTWLSAALTNQDTCAEGLEDTSGSVKDQMVDNLKDLSELVSNCLAIFSASGSGDFSGVPIQNKRRLMEKKEEEKEEEEEENVNRDISRKFPRWLNKRDRRLLSLPVSAIQADITVSKNGNGTVKTITEAIKKAPEHSTRRFIIYVRAGRYEENNLKVGRKKTNVMFIGDGKGKTVITGKKNVIDGMTTFHSASFAASGAGFIARDITFENYAGPAKHQAVALRVGADHAVVYRCNIVGYQDSCYVHSNRQFFRECNIYGTVDFIFGNAAVVFQKCNIYARKPMAQQKNTITAQNRKDPNQNTGISIHNCQILPAPDLAPVKGSFPTYLGRPWKQYSRTVYLVSYMGDHIHPRGWLEWNGDFALNTLYYGEYMNSGPGAAVGQRVQWPGYRVIKSTVEANRFTVAQFISGSAWLPSTGVAFAAGLST 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00927 502 Coils Coil 136 165 - -
Pumo9g00927 502 Pfam Pectinesterase 188 485 IPR000070 GO:0030599|GO:0042545
Pumo9g00927 502 SMART PMEI_2 1 122 IPR006501 GO:0004857
Pumo9g00927 502 CDD PMEI-like_3 2 125 - -
Pumo9g00927 502 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 2 124 IPR035513 -
Pumo9g00927 502 NCBIfam pectinesterase inhibitor domain 2 123 IPR006501 GO:0004857
Pumo9g00927 502 Gene3D - 182 500 IPR012334 -
Pumo9g00927 502 ProSitePatterns Pectinesterase signature 2. 333 342 IPR033131 -
Pumo9g00927 502 PANTHER PECTINESTERASE 4 490 - -
Pumo9g00927 502 FunFam Pectinesterase 182 500 - -
Pumo9g00927 502 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 125 IPR035513 -
Pumo9g00927 502 Pfam Plant invertase/pectin methylesterase inhibitor 13 122 IPR006501 GO:0004857
Pumo9g00927 502 SUPERFAMILY Pectin lyase-like 183 499 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00927 Pumo-Chr9 21177625 21181423 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00927 2 501 Carbohydrate Esterase AT5G53370 67.396 0.0 710
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00927 - - gmx:106796002 932.554