Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00893 ATGTTTGAATTTTGCTCTTGCCCCCAACCACTAGCCCGGCGAACTAAAACACCCGAAATGACCAAAATACCCTCAAATTTCCTCAAATTTCCATTCCAAATCCTCCTCCTCCTCCTCACCCTCTCGCTACCCTCCCCCGTAATTTCGCAGGACCAACAAACAACCCTCCTCAGCATCAAGCACCAACTCGGCGACCCTCCCTCGCTCCGCTCATGGAACTCCTCGTCGCCGCCGTGCGCCTGGCCGGAAACCCGCTGCTCCGGCGGCGCCGTCACGGAGCTCCACCTCGCCGGCAAAAACATCTCTTCTTACCTCCCGGCGGCGATCTGCGACCTCGCGCAGCTCGCGCACCTCAACCTCTCCGACAACAACATCGTCGGCGAGTTCCCGACGTTCCTTTCAAACTGCTCCAACCTCAGGCTCCTCGACCTCTCTCAGAACTACCTCGCCGGTCCCATCCCAAACGACATTGCAAAACTCAAAACGCTAAATTACCTCGACCTCGGCGGGAACAGCTTCTCCGGCGACGTCCCGGCGGCGGTCGGCGCAGCCTCCGAGCTCCGAACACTGCTCCTCTACCGGAACGATTTCAACGGCACGTTCCCGAAGGAACTCGGAAACCTAACGAATCTCGAAGTGTTAGGTTTGGCTTATAATAACTTCGTTAACCAAACGACGCCGTTTGAGTTCGGGAAACTGAAGAACCTGAAGACCATGTGGATGCCTATGTGTAACTTAATCGGAACAATACCTGAAAGTTTCGCGAATCTCACTAGCCTTGAACTACTCGACTTGTCGTTTAATTTGTTAACGGGGAATATTCCCAACGGTTTGTTCGCGCTAAAAACCTTGCAGTTTCTGTTTTTGTACCGTAACGGTTTAACGGGTGAAATACCCGTTTTACCCGGTTCGGTTCGGGGTTTTAGTTTGAGCCAGGTTGATTTGGCCATGAACAATTTGACCGGTTCGATTCCGGAGCTTTTCGGAATGTTAGAGAATTTGACGGTTTTGCACTTGTTTTCGAATCAGTTAACCGGTGAGATTCCGAGAAGTTTGGGCCTTACCCCAACGCTCAAGGATTTTAAAGTTTTTGGGAACGAGTTAGATGGGACTTTGCCGCCAGAATTTGGCTTATATTCGAAGATTGAGTCTTTTGAAGTTGCTAACAATCAACTAAGTGGTGGTTTACCGCAACATTTGTGTGACGGTGGTGCTTTGAAAGGTGTGATTGCGTTTTCTAACAATTTGAGTGGCGAGTTGCCACAATGGATGGGGAATTGTAGTTCTTTGAGAAGTGTTCAGCTTTACAATAACAGTTTTTCAGGTGAGGTGCCTTCGGGTTTGTGGAGTTTGAAAAATTTAACTACCTTGATGTTGAGTAACAACTCGTTTTCTGGTGAGCTTCCGAGAGAGCTAGCTTGGAATTTGTCAAGATTAGAGATTAGAAACAATTTCTTTTCGGGTAAGATTTCACTTGGGGTTTCTTCTGCGGTGAATTTGGTGGTTTTTGATGCGAGAAATAACATGTTATCCGGTGAGATTCCGAGGGCGTTGACGGGTCTTTTAAAGCTTAACACTCTCATGCTTGATGGAAACCAGCTTTATGGTGAACTTCCATCGGAGATAATCTCGTGGAAATCGCTCAACACTTTGAGTCTTGCAAGGAACAAACTCTTTGGTAACATTCCTGAAGCTTTGTGTGATCTTCGTGACCTTGTTTACTTGGACTTGGCTGAAAACAACATATCGGGTGAAATCCCACCTCAACTTGGTACCTTGAGGTTTGTGTTTCTCAACCTATCATCCAATAAGCTCTCAGGGAGTGTCCCTGATGAGTTCAACAACCTTGCATATGAAAACAGTTTCTTGAACAATCCTGATCTCTGTGCTCATAACCCAAATCTCAACCTTTCAAGCTGCTTGACCAAAAAGTCCACCACCCCACAAACCAAAAACTCTGATTCTCCCAAATACCTTGTCCCAATTCTTGTTCTCATCATCATTGTGTTGCTGGCAACTGCCTTTCTTGTGTTTTACAAGGTTAGAAAGAACTGTGGGGAAAAGCACTGTGGGGGTGACCTTTCAACTTGGAAGCTCACCTCATTCCAGAGGGTGAACTTCACTGAACTGAACCTCTTCTCTAGTTTGACAGAGGAGAACCTCATAGGGAGTGGAGGGTTTGGGAAAGTGTACCGCGTGGCCTCGGATAGGCCGGGCGAGTATGTTGCTGTGAAGAAGATATGGAATAGCATGAACCTTGATGAGAGGCTGGAGAGGGAGTTCATGGCTGAGGTTGAAATTCTGGGCAGCATCCGGCACTCCAATGTGGTGAAGCTTTTGTGCTGCTTTTCGAGTGAGAACTCAAAGCTTCTCGTGTATGAGTACATGGAGAACCAGAGCTTGGACAAGTGGCTTCATGGAAGGAAGAGAGTTTCAGCAAATGGGTTGAGTTCACCTAGCAAAAATTGTTTGCTCCTGAAGTGGCCAACGAGGTTGAGGATCGCGGTTGGAGCTGCACAAGGGTTGTGTTACATGCACCATGAGTATTCTCCTCCTATTGTCCATAGAGATGTGAAGTCTAGCAATATATTGATGGACTCAGAGTTCAGGGCCAGCATTGCAGATTTTGGGCTAGCTAGGATGTTGGTAAAGCCAGGGGAGCCACGTACAGTGTCCAATATTGCAGGGTCTCTTGGCTACATTCCACCAGAATACGCCTATTCAACAAAGATCAACGAGAAAGCTGATGTATATAGTTTTGGGGTGGTACTCCTAGAGCTTGTAACTGGAAAAGAGCCATATAGTGGAGGACAGCATGCAAGCAACCTAGTAGATTGGGCTTGGCAGCATTATAGGGAAGGAAAGTGCCTCACCAATGCATTGGATGAAGAAATCATAGAGACAAGTTATGTGGAAGAGATGACCACAGTCTTCAAATTAGGCCTTGTTTGCACAAGCAGGTTGCCCTCAAGTAGGCCTTCCATGAAGGAGATTTTGCAAGTTCTTCGTGAGTGTTGTTACCCTTCAGCTAATGGACGTAGTAGAAGAGTGGGAATTGGATTTGATATTGCTCTCCTTCATGGGGATGCCACTTACATTTCTAGTTATAAGGATGGTAATAAGGCTATAAGCGAAAATGAAGAAAGCTGCTTATATAGCGTGTAA 3165 0.4689 MFEFCSCPQPLARRTKTPEMTKIPSNFLKFPFQILLLLLTLSLPSPVISQDQQTTLLSIKHQLGDPPSLRSWNSSSPPCAWPETRCSGGAVTELHLAGKNISSYLPAAICDLAQLAHLNLSDNNIVGEFPTFLSNCSNLRLLDLSQNYLAGPIPNDIAKLKTLNYLDLGGNSFSGDVPAAVGAASELRTLLLYRNDFNGTFPKELGNLTNLEVLGLAYNNFVNQTTPFEFGKLKNLKTMWMPMCNLIGTIPESFANLTSLELLDLSFNLLTGNIPNGLFALKTLQFLFLYRNGLTGEIPVLPGSVRGFSLSQVDLAMNNLTGSIPELFGMLENLTVLHLFSNQLTGEIPRSLGLTPTLKDFKVFGNELDGTLPPEFGLYSKIESFEVANNQLSGGLPQHLCDGGALKGVIAFSNNLSGELPQWMGNCSSLRSVQLYNNSFSGEVPSGLWSLKNLTTLMLSNNSFSGELPRELAWNLSRLEIRNNFFSGKISLGVSSAVNLVVFDARNNMLSGEIPRALTGLLKLNTLMLDGNQLYGELPSEIISWKSLNTLSLARNKLFGNIPEALCDLRDLVYLDLAENNISGEIPPQLGTLRFVFLNLSSNKLSGSVPDEFNNLAYENSFLNNPDLCAHNPNLNLSSCLTKKSTTPQTKNSDSPKYLVPILVLIIIVLLATAFLVFYKVRKNCGEKHCGGDLSTWKLTSFQRVNFTELNLFSSLTEENLIGSGGFGKVYRVASDRPGEYVAVKKIWNSMNLDERLEREFMAEVEILGSIRHSNVVKLLCCFSSENSKLLVYEYMENQSLDKWLHGRKRVSANGLSSPSKNCLLLKWPTRLRIAVGAAQGLCYMHHEYSPPIVHRDVKSSNILMDSEFRASIADFGLARMLVKPGEPRTVSNIAGSLGYIPPEYAYSTKINEKADVYSFGVVLLELVTGKEPYSGGQHASNLVDWAWQHYREGKCLTNALDEEIIETSYVEEMTTVFKLGLVCTSRLPSSRPSMKEILQVLRECCYPSANGRSRRVGIGFDIALLHGDATYISSYKDGNKAISENEESCLYSV 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00893 1054 ProSiteProfiles Protein kinase domain profile. 716 1010 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g00893 1054 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 517 637 - -
Pumo9g00893 1054 SMART LRR_typ_2 521 545 IPR003591 -
Pumo9g00893 1054 SMART LRR_typ_2 112 136 IPR003591 -
Pumo9g00893 1054 SMART LRR_typ_2 451 475 IPR003591 -
Pumo9g00893 1054 SMART LRR_typ_2 569 593 IPR003591 -
Pumo9g00893 1054 SMART LRR_typ_2 257 281 IPR003591 -
Pumo9g00893 1054 SMART LRR_typ_2 331 355 IPR003591 -
Pumo9g00893 1054 ProSitePatterns Serine/Threonine protein kinases active-site signature. 853 865 IPR008271 GO:0004672|GO:0006468
Pumo9g00893 1054 SUPERFAMILY Protein kinase-like (PK-like) 709 1002 IPR011009 -
Pumo9g00893 1054 Gene3D Ribonuclease Inhibitor 48 194 IPR032675 -
Pumo9g00893 1054 Gene3D Phosphorylase Kinase; domain 1 698 795 - -
Pumo9g00893 1054 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 256 1004 - -
Pumo9g00893 1054 ProSitePatterns Protein kinases ATP-binding region signature. 722 746 IPR017441 GO:0005524
Pumo9g00893 1054 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 49 208 - -
Pumo9g00893 1054 FunFam Receptor-like protein kinase HSL1 696 795 - -
Pumo9g00893 1054 Gene3D Ribonuclease Inhibitor 195 302 IPR032675 -
Pumo9g00893 1054 Pfam Leucine rich repeat N-terminal domain 50 86 IPR013210 -
Pumo9g00893 1054 SUPERFAMILY L domain-like 314 610 - -
Pumo9g00893 1054 CDD STKc_IRAK 722 1002 - -
Pumo9g00893 1054 Gene3D Ribonuclease Inhibitor 477 660 IPR032675 -
Pumo9g00893 1054 Gene3D Ribonuclease Inhibitor 303 476 IPR032675 -
Pumo9g00893 1054 SUPERFAMILY L domain-like 62 397 - -
Pumo9g00893 1054 SMART serkin_6 716 1002 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g00893 1054 Gene3D Transferase(Phosphotransferase) domain 1 796 1014 - -
Pumo9g00893 1054 Pfam Leucine Rich Repeat 138 160 IPR001611 GO:0005515
Pumo9g00893 1054 FunFam Receptor-like protein kinase HSL1 isoform A 224 474 - -
Pumo9g00893 1054 Pfam Protein kinase domain 718 1000 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g00893 1054 FunFam Kinase family with leucine-rich repeat domain-containing protein 796 1017 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00893 Pumo-Chr9 19879649 19884487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00893 42 1004 Receptor kinase-like Gene Family AT5G25930 54.583 0.0 1020
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pumo9g00893 Pkinase 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00893 - K00924 gmx:100790817 1824.68