Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00885 ATGCCTGAACTCCGAAGCAGAAGAAAAAACCGGACAACGTTGTTGCATGACCCAAACCCGAACCCGAACCCGAATCCGAATCCGAATCCGAACCTCCAGAGGAGAACGAGAAGAGCCACTGCCAACACCGGCAGGAACAATCGGAACGCGCTCGTCGCAGGTTGTGGAATCGGTAACCCCGAATCAGAACAGAACGAACAAACACAACAACGGCAACAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAACCTCTGCTTAGGGTTTCTGAAGAGGAAAAGAGAGTGATGGATGACGAGTACGATAGCGGCGGTGGCCGCAGCCCCGACAAGGCTCCGGCCGCCGAAGATGAAGGAAGCAATGCTCCCATTCCTGAGAGGGTTCAGGTAGGTGGTTCACCGTTATACAAAGTAGATAGAAAGCTTGGTAAGGGAGGTTTCGGACAAGTTTACGTAGGCCGGCGCGTGGGTGCTGGTGCCGGAGCGTTAGAGGTAGCGATGAAGTTTGAGCATAGGAGCAGTAAGGGATGCAACTATGGACCTCCTTATGAGTGGCAAGTTTACAATGCATTGGGTGGTAGCCACGGTGTTCCACGAGTTCATTACAAGGGGCGGCAAGGTGATTACTACATTATGGTTATGGATATGCTTGGCCCTAGTCTATGGGATGTCTGGAATAACAATGCAAACATGATGACTGCGGAGATGGTGGCATGTATAGCAATTGAGGCTATCTCCATATTAGAGAAGATGCACTCTAGAGGATATGTGCATGGTGATGTAAAGCCTGAGAATTTTTTGCTTGGCACCCCGGGAACTCCTGATGAGAAAAAGCTTTTTCTGGTTGATCTTGGATTAGCAACCCGTTGGCGGGATAGTTCGACTGGCCTTCATGTTGAGTACGATCAACGTCCAGATGTATTTAGGGGAACAGTTCGTTATGCCAGTGTGCATGCTCATCTTGGCAGAACAGGTAGCAGGAGAGATGATTTGGAATCTCTTGCTTACACGCTAATCTTCCTTCTTCGTGGCCGGCTACCTTGGCAAGGATACCAGGGAGAAAATAAAGGATTTCTTGTCTGCAAGAAAAAGATGGCCACCTCCCCAGAAGCTTTGTGTTGCCTCAGTCCTCCACCTTTTCGGCAGTTTGTGGAGTATGTAGTGAATTTGAAGTTTGATGAGGAACCAAATTATGCAAAGTACATATCACTTTTTGATGGAATCGTTGGTCCAAATCCAGACATCAGACCCATAAACACTGATGGTGCACAAAAGCTTATATATCTGGTTGGACATAAGAGAGGACGATTGACTGTGGATGAAGAAGATGATGAACAACCAAAGAAGAAGGTCAGAATGGGAATGCCAGCAATGCAATGGATTAGTGTGTACAATGCCCGCCGACCTATGAAGCAAAGGTACCATTACAATGTTGCTGATGTGCGGCTGTCCCAACACATTGAGAAGGGATATGAGGATGGGTTATTTATCAGCAGTGTAGCTTGTTGTTCTAACCTTTGGGCCCTTATTATGGATGCTGGCACTGGTTTCACTGCACAAGTTCATGAACTCTCACCCAACTTTCTTCACAAGGAATGGATTATGGAGCAGTGGGAAAAGAATTATTACATTAGCGCCATAGCGGGATCTAATAATGGGAGCTCATTGGTTGTAATGTCTAAAGGGACCCAATACTTGCAGCAATCCTATAAAGTCAGTGAGTCATTTCCATTCAAGTGGATCAATAAAAAATGGAGAGAAGGATTTTATGTCACTGCTATGGCCACTGCTGGGAGTAGATGGGCAATTGTAATGTCCCGTGGTGCTGGATTTTCGGACCAGGTTGTGGAACTTGATTTCCTGTATCCTAGTGAAGGCGTTCATCGCAGGTGGGACAATGGTTACCGCATCACTTCAACTGCTGCTACATGGGACCAAGCTGCTCTTGTTCTTAGTGTTCCAAGAAGAAAACTGGCGGATGAAACTCAAGAGACACTCCGCACATCTGCCTTTCCCAGTACTCATGTCAAGGATAAATGGTCAAAAAATCTCTACATTGCATCTATATGCTACGGGAGAACAGTTTCATGA 2097 0.4678 MPELRSRRKNRTTLLHDPNPNPNPNPNPNPNLQRRTRRATANTGRNNRNALVAGCGIGNPESEQNEQTQQRQQQQQQQQQQQQQQQPLLRVSEEEKRVMDDEYDSGGGRSPDKAPAAEDEGSNAPIPERVQVGGSPLYKVDRKLGKGGFGQVYVGRRVGAGAGALEVAMKFEHRSSKGCNYGPPYEWQVYNALGGSHGVPRVHYKGRQGDYYIMVMDMLGPSLWDVWNNNANMMTAEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGTPGTPDEKKLFLVDLGLATRWRDSSTGLHVEYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFLVCKKKMATSPEALCCLSPPPFRQFVEYVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTDGAQKLIYLVGHKRGRLTVDEEDDEQPKKKVRMGMPAMQWISVYNARRPMKQRYHYNVADVRLSQHIEKGYEDGLFISSVACCSNLWALIMDAGTGFTAQVHELSPNFLHKEWIMEQWEKNYYISAIAGSNNGSSLVVMSKGTQYLQQSYKVSESFPFKWINKKWREGFYVTAMATAGSRWAIVMSRGAGFSDQVVELDFLYPSEGVHRRWDNGYRITSTAATWDQAALVLSVPRRKLADETQETLRTSAFPSTHVKDKWSKNLYIASICYGRTVS 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00885 698 MobiDBLite consensus disorder prediction 1 133 - -
Pumo9g00885 698 ProSitePatterns Protein kinases ATP-binding region signature. 144 170 IPR017441 GO:0005524
Pumo9g00885 698 PANTHER CASEIN KINASE-RELATED 138 661 - -
Pumo9g00885 698 FunFam casein kinase 1-like protein HD16 111 454 - -
Pumo9g00885 698 MobiDBLite consensus disorder prediction 90 116 - -
Pumo9g00885 698 MobiDBLite consensus disorder prediction 30 49 - -
Pumo9g00885 698 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Pumo9g00885 698 ProSiteProfiles Protein kinase domain profile. 138 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g00885 698 Gene3D Transferase(Phosphotransferase) domain 1 111 426 - -
Pumo9g00885 698 SMART serkin_6 138 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g00885 698 CDD STKc_CK1 138 407 - -
Pumo9g00885 698 MobiDBLite consensus disorder prediction 60 89 - -
Pumo9g00885 698 Pfam Protein kinase domain 138 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g00885 698 SUPERFAMILY Protein kinase-like (PK-like) 138 413 IPR011009 -
Pumo9g00885 698 Coils Coil 64 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00885 Pumo-Chr9 19627999 19633941 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00885 132 356 AGC Kinase Gene Family AT3G08730 22.467 9.47e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Pumo9g00885 Pkinase 3.8e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00885 - - pop:7476691 1131.7