Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00878 ATGGAATCACCCAACTCTTCCCCAATTTTCCCACAATTCACCTTCGACACCAACAAGAACAACAACAACCCCGACCACTTCATCGTTGAGGACCTCCTGGATTTCTCCAACGACGACGTTGTCATCGCCGACGCCACCTTCGACTCCGTCACCACCGACTCTTCCACCATCACCACTGCCGTTGACAGCTGCAACTCCTCCTCCTTCTCCGGCTCCGACCCCAATACCCTTCCCGATGGCCATTTCTCCGGTGACCTCTGCGTTCCGTATGATGACATAGCGGAGTTAGAATGGCTTTCGAATTTCGTGGAGGAGTCGTTTTCGAGCGAGGACCTGCAGAAGATGCAGCTGATATCAGGCATGAATGCGCGAAACGACGACGTATCAGAGGCCCGCGAGTTCCACTACGAGCCCACCAGAAGCGGGTTCCACACCCCCGAGCCCACCAGAAGCGGCGGGCTCCACTCCGAGCCAACCAGAAACAACCCAATATTCAATTCGGAAGTGTCGGTTCCAGCCAAGGCCCGCAGCAAGAGGTCCCGCGGGCCCCCATGCAACTGGGCCTCGCGCCTCCTCGTCCTGTCCCCGACGACGTCGACCTCTTCGGACTCGGCCGAGGTCATAATGCCCGCTCCCGCCGCCATCAAGCCCGGCCCGGCCCCCGCGAAGAAGCCCGCGAAGGCCGCGCCGAGGAAGAAGGACAGCGGCAGCGACGGCAGCGGCAGCGGCGGCGACGGGCGCAGGTGCTTGCACTGCGCCACGGACAAGACCCCGCAGTGGCGGACCGGGCCCATGGGCCCGAAGACTCTGTGCAATGCCTGTGGCGTGAGGTACAAGTCGGGCCGGCTCGTGCCCGAGTACAGGCCCGCGGCCAGCCCGACTTTCGTTCTGACCAAGCACTCCAACTCGCACCGCAAGGTGCTGGAGCTGCGAAGGCAGAAGGAAATGGTGCGGGCCCAGCAACACCAGCAGCAGCATCAGCCACAACAGTTCCTACAACAACACCACCACCAACACCAACATCACCACCACCATCATCATCAGAACGTGATGTTTGATGTATCCAACGGTGACGATTACTTGATCCACCAACACGTGGGCCCCGATTTCAGGCAGCTTATCTAG 1125 0.6053 MESPNSSPIFPQFTFDTNKNNNNPDHFIVEDLLDFSNDDVVIADATFDSVTTDSSTITTAVDSCNSSSFSGSDPNTLPDGHFSGDLCVPYDDIAELEWLSNFVEESFSSEDLQKMQLISGMNARNDDVSEAREFHYEPTRSGFHTPEPTRSGGLHSEPTRNNPIFNSEVSVPAKARSKRSRGPPCNWASRLLVLSPTTSTSSDSAEVIMPAPAAIKPGPAPAKKPAKAAPRKKDSGSDGSGSGGDGRRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRAQQHQQQHQPQQFLQQHHHQHQHHHHHHHQNVMFDVSNGDDYLIHQHVGPDFRQLI 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00878 374 PIRSF Txn_fac_GATA_plant 10 347 IPR016679 GO:0003677|GO:0005634|GO:0045893
Pumo9g00878 374 ProSitePatterns GATA-type zinc finger domain. 249 274 IPR000679 GO:0006355|GO:0043565
Pumo9g00878 374 SMART GATA_3 243 293 IPR000679 GO:0006355|GO:0043565
Pumo9g00878 374 MobiDBLite consensus disorder prediction 137 187 - -
Pumo9g00878 374 ProSiteProfiles GATA-type zinc finger domain profile. 243 279 IPR000679 GO:0006355|GO:0043565
Pumo9g00878 374 Pfam GATA zinc finger 249 282 IPR000679 GO:0006355|GO:0043565
Pumo9g00878 374 MobiDBLite consensus disorder prediction 320 334 - -
Pumo9g00878 374 CDD ZnF_GATA 248 295 IPR000679 GO:0006355|GO:0043565
Pumo9g00878 374 MobiDBLite consensus disorder prediction 212 250 - -
Pumo9g00878 374 PANTHER GATA TRANSCRIPTION FACTOR 19 326 - -
Pumo9g00878 374 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 244 307 - -
Pumo9g00878 374 Gene3D - 244 293 IPR013088 GO:0006355|GO:0008270
Pumo9g00878 374 MobiDBLite consensus disorder prediction 152 168 - -
Pumo9g00878 374 MobiDBLite consensus disorder prediction 319 348 - -
Pumo9g00878 374 FunFam GATA transcription factor 240 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00878 Pumo-Chr9 19330521 19332793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00878 27 374 C2C2-Gata Transcription Factor Family AT5G25830 51.374 2.76e-98 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pumo9g00878 GATA 3.5e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00878 - - gmx:100800146 553.518