Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo9g00872 | ATGAGAGTTTCACCCCAGAATAATTCCGAGACAGAGAGTAGCTCTACCTCATTTCTATCACCATCACCATCATCGTCATCGTCACCACCACCGTCGTCCGAATCCAAGACGGAGAAACGCAACCGCGAGTCCAACAGGCACCCGGTGTACCGCGGGGTGCGCATGCGGAACTGGGGGAAATGGGTGTCCGAAATCCGCGAGCCGCGCAAGAAGTCACGCATATGGCTGGGCACATTCCCCACGCCGGAAATGGCGGCGAGGGCGCACGACGCGGCAGCGCTCAGCATAAAGGGCAACAGCGCCATTCTCAACTTCCCCGAACTCGCGGCCTCGCTTCCCCGTCCGGCGTCCCTGGCCCCCCGCGATGTGCAGGCCGCGGCCACCAAAGCGGCTCACATGGACCTGCCTGCTTCTTCTTCTTCTTTTTCTAACATTTCATCGTCTTTGGTTCCAACAACTTCCTCCTCGTTATCGTCTTCGTCTTTGTCCTCGTTGGCTTCCACCGCGGACTTGTTGTCCACTGCGTCCGAGGAACTGAGCGAGATCATCGAGTTGCCGAGGCTGGAAACGAGTTACGAGCTGGGGAACGAGTTTGTGTTCATGGACTCGCAGGACACGTGGATGTATCAGCCACCGATACCGTGGTTGCATGCTACATACGACGGTTCTGATGCAGATGAGTTTGCAATGCCAGAGAGTGGGGTTGTGACTACTAGTTTTGAGAGTTTTCTGTGGGATTACTGA | 744 | 0.5632 | MRVSPQNNSETESSSTSFLSPSPSSSSSPPPSSESKTEKRNRESNRHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDAAALSIKGNSAILNFPELAASLPRPASLAPRDVQAAATKAAHMDLPASSSSFSNISSSLVPTTSSSLSSSSLSSLASTADLLSTASEELSEIIELPRLETSYELGNEFVFMDSQDTWMYQPPIPWLHATYDGSDADEFAMPESGVVTTSFESFLWDY | 247 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo9g00872 | 247 | MobiDBLite | consensus disorder prediction | 35 | 50 | - | - | |
Pumo9g00872 | 247 | CDD | AP2 | 50 | 108 | IPR001471 | GO:0003700|GO:0006355 | |
Pumo9g00872 | 247 | Gene3D | AP2/ERF domain | 49 | 107 | IPR036955 | GO:0003700|GO:0006355 | |
Pumo9g00872 | 247 | FunFam | Ethylene-responsive transcription factor 2 | 48 | 107 | - | - | |
Pumo9g00872 | 247 | SUPERFAMILY | DNA-binding domain | 49 | 107 | IPR016177 | GO:0003677 | |
Pumo9g00872 | 247 | SMART | rav1_2 | 49 | 112 | IPR001471 | GO:0003700|GO:0006355 | |
Pumo9g00872 | 247 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
Pumo9g00872 | 247 | PRINTS | Ethylene responsive element binding protein signature | 72 | 88 | IPR001471 | GO:0003700|GO:0006355 | |
Pumo9g00872 | 247 | PRINTS | Ethylene responsive element binding protein signature | 50 | 61 | IPR001471 | GO:0003700|GO:0006355 | |
Pumo9g00872 | 247 | ProSiteProfiles | AP2/ERF domain profile. | 49 | 106 | IPR001471 | GO:0003700|GO:0006355 | |
Pumo9g00872 | 247 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 27 | 195 | - | - | |
Pumo9g00872 | 247 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
Pumo9g00872 | 247 | Pfam | AP2 domain | 48 | 98 | IPR001471 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo9g00872 | Pumo-Chr9 | 19158861 | 19160060 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo9g00872 | 16 | 212 | AP2-EREBP Transcription Factor Family | AT5G11590 | 63.107 | 2.64e-71 | 216 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2/ERF-ERF | Pumo9g00872 | AP2 | 1.1e-14 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo9g00872 | K09286 | - | gmx:100305349 | 346.28 |