Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00872 ATGAGAGTTTCACCCCAGAATAATTCCGAGACAGAGAGTAGCTCTACCTCATTTCTATCACCATCACCATCATCGTCATCGTCACCACCACCGTCGTCCGAATCCAAGACGGAGAAACGCAACCGCGAGTCCAACAGGCACCCGGTGTACCGCGGGGTGCGCATGCGGAACTGGGGGAAATGGGTGTCCGAAATCCGCGAGCCGCGCAAGAAGTCACGCATATGGCTGGGCACATTCCCCACGCCGGAAATGGCGGCGAGGGCGCACGACGCGGCAGCGCTCAGCATAAAGGGCAACAGCGCCATTCTCAACTTCCCCGAACTCGCGGCCTCGCTTCCCCGTCCGGCGTCCCTGGCCCCCCGCGATGTGCAGGCCGCGGCCACCAAAGCGGCTCACATGGACCTGCCTGCTTCTTCTTCTTCTTTTTCTAACATTTCATCGTCTTTGGTTCCAACAACTTCCTCCTCGTTATCGTCTTCGTCTTTGTCCTCGTTGGCTTCCACCGCGGACTTGTTGTCCACTGCGTCCGAGGAACTGAGCGAGATCATCGAGTTGCCGAGGCTGGAAACGAGTTACGAGCTGGGGAACGAGTTTGTGTTCATGGACTCGCAGGACACGTGGATGTATCAGCCACCGATACCGTGGTTGCATGCTACATACGACGGTTCTGATGCAGATGAGTTTGCAATGCCAGAGAGTGGGGTTGTGACTACTAGTTTTGAGAGTTTTCTGTGGGATTACTGA 744 0.5632 MRVSPQNNSETESSSTSFLSPSPSSSSSPPPSSESKTEKRNRESNRHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDAAALSIKGNSAILNFPELAASLPRPASLAPRDVQAAATKAAHMDLPASSSSFSNISSSLVPTTSSSLSSSSLSSLASTADLLSTASEELSEIIELPRLETSYELGNEFVFMDSQDTWMYQPPIPWLHATYDGSDADEFAMPESGVVTTSFESFLWDY 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00872 247 MobiDBLite consensus disorder prediction 35 50 - -
Pumo9g00872 247 CDD AP2 50 108 IPR001471 GO:0003700|GO:0006355
Pumo9g00872 247 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Pumo9g00872 247 FunFam Ethylene-responsive transcription factor 2 48 107 - -
Pumo9g00872 247 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677
Pumo9g00872 247 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Pumo9g00872 247 MobiDBLite consensus disorder prediction 1 34 - -
Pumo9g00872 247 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Pumo9g00872 247 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Pumo9g00872 247 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Pumo9g00872 247 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 27 195 - -
Pumo9g00872 247 MobiDBLite consensus disorder prediction 1 51 - -
Pumo9g00872 247 Pfam AP2 domain 48 98 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00872 Pumo-Chr9 19158861 19160060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00872 16 212 AP2-EREBP Transcription Factor Family AT5G11590 63.107 2.64e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo9g00872 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00872 K09286 - gmx:100305349 346.28